Variant report

Variant	rs73965707
Chromosome Location	chr2:142314485-142314486
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 18 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:12)

rs_ID	r²[population]
rs55677762	0.80[AFR][1000 genomes]
rs56238953	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs56394617	0.80[AFR][1000 genomes]
rs58536842	0.80[AFR][1000 genomes]
rs62169806	0.80[AFR][1000 genomes]
rs73965708	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73965709	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73965712	0.90[AFR][1000 genomes]
rs73965713	0.86[AFR][1000 genomes]
rs73965715	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73965716	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73965730	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv583203	chr2:142055133-142378975	Weak transcription ZNF genes & repeats Enhancers Flanking Active TSS Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
2	nsv875240	chr2:142199421-142347455	Enhancers Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS Genic enhancers Bivalent Enhancer	Chromatin interactive region	2 gene(s)	inside rSNPs	n/a
3	nsv834393	chr2:142256714-142431564	Weak transcription Enhancers Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	n/a
4	nsv459640	chr2:142291211-142345574	Enhancers Weak transcription Active TSS Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	n/a
5	nsv583213	chr2:142291211-142345574	Enhancers Weak transcription Active TSS Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	n/a
6	nsv583214	chr2:142299923-142458316	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:12 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:142312200-142314600	Enhancers	Brain Substantia Nigra	brain
2	chr2:142313600-142315800	Enhancers	NH-A	brain
3	chr2:142313600-142316000	Enhancers	Muscle Satellite Cultured Cells	--
4	chr2:142313800-142315800	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
5	chr2:142313800-142316000	Enhancers	HMEC	breast
6	chr2:142314000-142315000	Weak transcription	Brain Hippocampus Middle	brain
7	chr2:142314200-142314800	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
8	chr2:142314200-142315200	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
9	chr2:142314200-142315200	Enhancers	Brain Inferior Temporal Lobe	brain
10	chr2:142314200-142315800	Enhancers	Primary hematopoietic stem cells short term culture	blood
11	chr2:142314200-142316000	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
12	chr2:142314400-142316000	Enhancers	Primary hematopoietic stem cells	blood

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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