Variant report

Variant	rs73966411
Chromosome Location	chr2:100672611-100672612
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr2:100668681..100670684-chr2:100672426..100674469,2	MCF-7	breast:
2	chr2:100664157..100666108-chr2:100671125..100674050,2	MCF-7	breast:

Extended variants
information (count: 5 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:3)

rs_ID	r²[population]
rs11891517	1.00[EUR][1000 genomes]
rs55982857	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73966412	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1003343	chr2:100241560-100848900	Weak transcription Enhancers Strong transcription Active TSS Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
2	nsv535843	chr2:100241560-100848900	Genic enhancers Enhancers Weak transcription Bivalent Enhancer Active TSS Strong transcription Flanking Active TSS Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:30 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:100656400-100680000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
2	chr2:100656600-100686600	Weak transcription	Primary hematopoietic stem cells short term culture	blood
3	chr2:100659400-100680000	Weak transcription	Stomach Smooth Muscle	stomach
4	chr2:100660600-100678200	Weak transcription	Fetal Muscle Leg	muscle
5	chr2:100662200-100684800	Weak transcription	Ovary	ovary
6	chr2:100662800-100674200	Weak transcription	Colon Smooth Muscle	Colon
7	chr2:100663000-100680800	Weak transcription	Fetal Kidney	kidney
8	chr2:100663000-100682200	Weak transcription	Fetal Heart	heart
9	chr2:100664400-100699600	Weak transcription	Aorta	Aorta
10	chr2:100666400-100672800	Weak transcription	NH-A	brain
11	chr2:100666800-100675000	Strong transcription	Primary B cells from cord blood	blood
12	chr2:100666800-100675800	Strong transcription	Primary B cells from peripheral blood	blood
13	chr2:100667800-100688000	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
14	chr2:100669200-100672800	Weak transcription	Dnd41	blood
15	chr2:100669200-100673200	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
16	chr2:100669400-100675400	Weak transcription	Thymus	Thymus
17	chr2:100669400-100676200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
18	chr2:100669400-100681200	Weak transcription	Brain Germinal Matrix	brain
19	chr2:100669600-100672800	Weak transcription	Fetal Thymus	thymus
20	chr2:100669800-100680600	Weak transcription	Fetal Brain Female	brain
21	chr2:100670200-100673600	Enhancers	Placenta	Placenta
22	chr2:100670800-100676000	Weak transcription	Primary hematopoietic stem cells	blood
23	chr2:100671000-100673400	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
24	chr2:100671200-100678600	Weak transcription	Primary monocytes fromperipheralblood	blood
25	chr2:100671600-100672800	Enhancers	Fetal Brain Male	brain
26	chr2:100671800-100676200	Weak transcription	Gastric	stomach
27	chr2:100671800-100676400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
28	chr2:100672400-100674600	Enhancers	Fetal Lung	lung
29	chr2:100672400-100675600	Weak transcription	Primary T cells from cord blood	blood
30	chr2:100672600-100675200	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin

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