Variant report

Variant	rs739733
Chromosome Location	chr4:110602036-110602037
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 13 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs10005056	0.85[ASN][1000 genomes]
rs11942332	0.95[CEU][hapmap];0.82[JPT][hapmap];0.83[ASN][1000 genomes]
rs12640500	0.89[CEU][hapmap];0.82[JPT][hapmap]
rs3212153	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4698779	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.89[AMR][1000 genomes];0.94[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs5030576	1.00[CHB][hapmap];0.85[ASN][1000 genomes]
rs55814811	0.96[AMR][1000 genomes];0.87[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs6851009	0.84[CEU][hapmap]
rs72674817	0.83[ASN][1000 genomes]
rs72674835	1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7694402	0.89[CEU][hapmap];0.82[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3349784	chr4:110348873-110723163	Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Active TSS Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	35 gene(s)	inside rSNPs	diseases
2	nsv508303	chr4:110579305-110604452	Weak transcription Enhancers Strong transcription ZNF genes & repeats Flanking Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:67 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:110571000-110605400	Weak transcription	Left Ventricle	heart
2	chr4:110572600-110623200	Weak transcription	Esophagus	oesophagus
3	chr4:110579200-110608400	Weak transcription	Ovary	ovary
4	chr4:110583600-110605600	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
5	chr4:110584200-110606000	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
6	chr4:110584400-110608800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
7	chr4:110585800-110608800	Weak transcription	Adipose Nuclei	Adipose
8	chr4:110586000-110605200	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
9	chr4:110589600-110623200	Weak transcription	Brain Substantia Nigra	brain
10	chr4:110590200-110602600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
11	chr4:110590600-110606000	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
12	chr4:110591200-110602600	Weak transcription	Primary T killer memory cells from peripheral blood	blood
13	chr4:110591200-110608600	Weak transcription	Primary T helper naive cells from peripheral blood	blood
14	chr4:110591600-110605000	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
15	chr4:110592000-110611600	Weak transcription	Rectal Smooth Muscle	rectum
16	chr4:110592800-110603800	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
17	chr4:110593000-110608200	Weak transcription	Fetal Lung	lung
18	chr4:110593800-110611600	Weak transcription	K562	blood
19	chr4:110596600-110605600	Weak transcription	GM12878-XiMat	blood
20	chr4:110597000-110605800	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
21	chr4:110597400-110605600	Weak transcription	Primary hematopoietic stem cells	blood
22	chr4:110597600-110603600	Weak transcription	Cortex derived primary cultured neurospheres	brain
23	chr4:110598400-110608200	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
24	chr4:110598600-110603600	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
25	chr4:110598600-110610400	Weak transcription	HSMMtube	muscle
26	chr4:110598800-110611200	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
27	chr4:110598800-110622800	Weak transcription	NHEK	skin
28	chr4:110599400-110611400	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
29	chr4:110600000-110610600	Weak transcription	Colon Smooth Muscle	Colon
30	chr4:110600000-110611400	Weak transcription	Spleen	Spleen
31	chr4:110600200-110603600	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
32	chr4:110600200-110604800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
33	chr4:110600200-110613200	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
34	chr4:110600400-110610000	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
35	chr4:110600400-110610200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
36	chr4:110600400-110611800	Weak transcription	NHDF-Ad	bronchial
37	chr4:110600600-110603600	Weak transcription	Primary monocytes fromperipheralblood	blood
38	chr4:110600600-110611200	Weak transcription	HSMM	muscle
39	chr4:110600800-110602800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
40	chr4:110600800-110604400	Strong transcription	Primary T cells from cord blood	blood
41	chr4:110600800-110604800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
42	chr4:110600800-110605400	Weak transcription	Thymus	Thymus
43	chr4:110600800-110605600	Weak transcription	Fetal Thymus	thymus
44	chr4:110600800-110622600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
45	chr4:110601000-110602600	Weak transcription	iPS-15b Cell Line	embryonic stem cell
46	chr4:110601000-110602800	Weak transcription	H1 Cell Line	embryonic stem cell
47	chr4:110601000-110606600	Weak transcription	Primary hematopoietic stem cells short term culture	blood
48	chr4:110601000-110607400	Weak transcription	Fetal Stomach	stomach
49	chr4:110601000-110608400	Weak transcription	Duodenum Mucosa	Duodenum
50	chr4:110601200-110610200	Weak transcription	Sigmoid Colon	Sigmoid Colon

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