Variant report

Variant	rs73974109
Chromosome Location	chr2:174083367-174083368
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr2:174079336..174081370-chr2:174081399..174084609,3	MCF-7	breast:
2	chr2:174082835..174084549-chr2:174085627..174087746,2	K562	blood:
3	chr2:174082835..174085269-chr2:174086246..174090013,3	K562	blood:

Extended variants
information (count: 18 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:16)

rs_ID	r²[population]
rs56200856	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs57073707	1.00[AMR][1000 genomes]
rs57131128	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs57152825	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs60769697	1.00[AMR][1000 genomes]
rs6707106	1.00[AMR][1000 genomes]
rs6751482	1.00[AMR][1000 genomes]
rs73971692	1.00[AMR][1000 genomes]
rs73971693	1.00[AMR][1000 genomes]
rs73971696	1.00[AMR][1000 genomes]
rs73971888	1.00[AMR][1000 genomes]
rs73971891	1.00[AMR][1000 genomes]
rs73974104	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73974106	1.00[AMR][1000 genomes]
rs73974108	1.00[AMR][1000 genomes]
rs73974110	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1011724	chr2:173916482-174231908	Enhancers Flanking Bivalent TSS/Enh Strong transcription Flanking Active TSS Weak transcription Bivalent Enhancer Active TSS Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	15 gene(s)	inside rSNPs	diseases
2	nsv834460	chr2:173919464-174085288	Strong transcription Enhancers ZNF genes & repeats Weak transcription Flanking Active TSS Transcr. at gene 5' and 3' Genic enhancers Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:94 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:174048600-174095200	Weak transcription	Thymus	Thymus
2	chr2:174053400-174089800	Weak transcription	Pancreas	Pancrea
3	chr2:174058000-174112800	Weak transcription	Spleen	Spleen
4	chr2:174060200-174092600	Weak transcription	Aorta	Aorta
5	chr2:174061200-174097600	Weak transcription	Lung	lung
6	chr2:174061400-174092200	Weak transcription	Brain Substantia Nigra	brain
7	chr2:174063600-174097600	Weak transcription	HSMM	muscle
8	chr2:174063800-174095000	Weak transcription	Right Ventricle	heart
9	chr2:174064200-174083400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
10	chr2:174064200-174097600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
11	chr2:174069400-174097000	Weak transcription	Fetal Muscle Trunk	muscle
12	chr2:174069400-174097600	Weak transcription	Primary B cells from cord blood	blood
13	chr2:174069600-174096600	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
14	chr2:174071800-174094200	Weak transcription	Fetal Thymus	thymus
15	chr2:174072200-174095400	Weak transcription	Right Atrium	heart
16	chr2:174075400-174097600	Weak transcription	Muscle Satellite Cultured Cells	--
17	chr2:174076400-174087800	Weak transcription	K562	blood
18	chr2:174076800-174085800	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
19	chr2:174077000-174086000	Weak transcription	A549	lung
20	chr2:174077000-174091800	Weak transcription	Duodenum Mucosa	Duodenum
21	chr2:174077400-174096400	Weak transcription	Hela-S3	cervix
22	chr2:174078800-174091200	Weak transcription	Liver	Liver
23	chr2:174078800-174097800	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
24	chr2:174079200-174085800	Weak transcription	Fetal Muscle Leg	muscle
25	chr2:174080800-174085600	Weak transcription	Skeletal Muscle Female	skeletal muscle
26	chr2:174081000-174083600	Weak transcription	Primary neutrophils fromperipheralblood	blood
27	chr2:174081600-174084200	Enhancers	HUES64 Cell Line	embryonic stem cell
28	chr2:174081600-174084600	Enhancers	Fetal Lung	lung
29	chr2:174081800-174083400	Enhancers	Fetal Brain Male	brain
30	chr2:174081800-174083800	Enhancers	iPS-15b Cell Line	embryonic stem cell
31	chr2:174081800-174083800	Enhancers	NHDF-Ad	bronchial
32	chr2:174082000-174083400	Weak transcription	H1 Cell Line	embryonic stem cell
33	chr2:174082000-174083600	Enhancers	NHLF	lung
34	chr2:174082000-174083800	Enhancers	Osteobl	bone
35	chr2:174082000-174084000	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
36	chr2:174082200-174083400	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
37	chr2:174082200-174083600	Enhancers	ES-I3 Cell Line	embryonic stem cell
38	chr2:174082200-174083800	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
39	chr2:174082200-174084000	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
40	chr2:174082200-174084600	Enhancers	Primary T cells from cord blood	blood
41	chr2:174082200-174085800	Weak transcription	Ovary	ovary
42	chr2:174082200-174088400	Weak transcription	Psoas Muscle	Psoas
43	chr2:174082200-174088800	Weak transcription	NHEK	skin
44	chr2:174082200-174095800	Weak transcription	Fetal Stomach	stomach
45	chr2:174082200-174097400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
46	chr2:174082400-174083600	Enhancers	Fetal Brain Female	brain
47	chr2:174082400-174083800	Enhancers	iPS-20b Cell Line	embryonic stem cell
48	chr2:174082400-174084000	Enhancers	Rectal Smooth Muscle	rectum
49	chr2:174082400-174084200	Enhancers	Colon Smooth Muscle	Colon
50	chr2:174082600-174083800	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain

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