Variant report

Variant	rs73976576
Chromosome Location	chr2:173044120-173044121
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr2:173041440..173044413-chr2:173328538..173330490,2	MCF-7	breast:

Extended variants
information (count: 5 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:3)

rs_ID	r²[population]
rs11892244	1.00[EUR][1000 genomes]
rs57982896	1.00[EUR][1000 genomes]
rs73976573	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv875413	chr2:173009413-173097343	Enhancers Active TSS Bivalent Enhancer Flanking Active TSS Weak transcription ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Strong transcription	TF binding region CpG island Chromatin interactive region	4 gene(s)	inside rSNPs	diseases
2	esv2762294	chr2:173028656-173071270	Enhancers Flanking Active TSS Active TSS Weak transcription Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Strong transcription	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:50 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:173038200-173045200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
2	chr2:173042200-173044800	Enhancers	Breast Myoepithelial Primary Cells	Breast
3	chr2:173042400-173044200	Enhancers	NH-A	brain
4	chr2:173042400-173044800	Enhancers	NHEK	skin
5	chr2:173042600-173045000	Enhancers	HMEC	breast
6	chr2:173042600-173045600	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
7	chr2:173042800-173045000	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
8	chr2:173042800-173045200	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
9	chr2:173042800-173046400	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
10	chr2:173043000-173046800	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
11	chr2:173043200-173044400	Enhancers	Left Ventricle	heart
12	chr2:173043200-173044400	Enhancers	Right Atrium	heart
13	chr2:173043200-173046600	Weak transcription	Hela-S3	cervix
14	chr2:173043400-173044400	Enhancers	Primary T helper naive cells fromperipheralblood	blood
15	chr2:173043600-173044600	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
16	chr2:173043600-173045000	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
17	chr2:173043600-173045400	Enhancers	Primary T killer memory cells from peripheral blood	blood
18	chr2:173043800-173044200	Enhancers	HUES6 Cell Line	embryonic stem cell
19	chr2:173043800-173044200	Enhancers	Primary T cells effector/memory enriched fromperipheralblood	blood
20	chr2:173043800-173044200	Enhancers	Monocytes-CD14+_RO01746	blood
21	chr2:173043800-173044400	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
22	chr2:173043800-173044400	Enhancers	Primary mononuclear cells fromperipheralblood	Blood
23	chr2:173043800-173044400	Enhancers	Duodenum Mucosa	Duodenum
24	chr2:173043800-173044400	Enhancers	Rectal Mucosa Donor 29	rectum
25	chr2:173043800-173044600	Enhancers	Spleen	Spleen
26	chr2:173043800-173044800	Enhancers	Primary T killer naive cells fromperipheralblood	blood
27	chr2:173043800-173045000	Enhancers	Primary T cells from cord blood	blood
28	chr2:173043800-173045000	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
29	chr2:173043800-173045400	Enhancers	Primary T helper naive cells from peripheral blood	blood
30	chr2:173044000-173044200	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
31	chr2:173044000-173044200	Enhancers	iPS-15b Cell Line	embryonic stem cell
32	chr2:173044000-173044200	Bivalent Enhancer	iPS-18 Cell Line	embryonic stem cell
33	chr2:173044000-173044200	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
34	chr2:173044000-173044200	Enhancers	Fetal Thymus	thymus
35	chr2:173044000-173044200	Enhancers	Ovary	ovary
36	chr2:173044000-173044200	Enhancers	Sigmoid Colon	Sigmoid Colon
37	chr2:173044000-173044200	Enhancers	Stomach Mucosa	stomach
38	chr2:173044000-173044200	Enhancers	Thymus	Thymus
39	chr2:173044000-173044400	Enhancers	H9 Cell Line	embryonic stem cell
40	chr2:173044000-173044400	Enhancers	Primary hematopoietic stem cells short term culture	blood
41	chr2:173044000-173044400	Enhancers	Small Intestine	intestine
42	chr2:173044000-173044600	Enhancers	Esophagus	oesophagus
43	chr2:173044000-173044800	Enhancers	ES-I3 Cell Line	embryonic stem cell
44	chr2:173044000-173045000	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
45	chr2:173044000-173045000	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
46	chr2:173044000-173045000	Enhancers	Primary T helper cells fromperipheralblood	blood
47	chr2:173044000-173045000	Enhancers	Rectal Mucosa Donor 31	rectum
48	chr2:173044000-173045200	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
49	chr2:173044000-173045200	Enhancers	Primary T helper cells PMA-I stimulated	--
50	chr2:173044000-173045600	Enhancers	Primary T cells fromperipheralblood	blood

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