Variant report

Variant	rs73977684
Chromosome Location	chr2:178501513-178501514
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 20 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:16)

rs_ID	r²[population]
rs16865476	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs4555380	1.00[AMR][1000 genomes]
rs6712307	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73977672	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73977675	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73977677	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73977679	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73977685	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73977693	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73977698	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73977699	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73979509	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73979510	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73979511	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7559596	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7575717	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv999086	chr2:178262348-178773585	Weak transcription Enhancers ZNF genes & repeats Strong transcription Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	14 gene(s)	inside rSNPs	diseases
2	nsv536055	chr2:178262348-178773585	Active TSS Weak transcription Enhancers Strong transcription ZNF genes & repeats Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	14 gene(s)	inside rSNPs	diseases
3	nsv583688	chr2:178427640-178540293	Enhancers Flanking Bivalent TSS/Enh Weak transcription Active TSS Flanking Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	12 gene(s)	inside rSNPs	diseases
4	nsv583689	chr2:178468008-178509820	Enhancers Flanking Active TSS Weak transcription Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:178499200-178503400	Weak transcription	Fetal Muscle Leg	muscle
2	chr2:178499200-178503600	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
3	chr2:178499200-178505400	Weak transcription	Fetal Lung	lung
4	chr2:178499800-178504000	Weak transcription	Right Atrium	heart
5	chr2:178499800-178505400	Weak transcription	Fetal Kidney	kidney
6	chr2:178500000-178501600	Weak transcription	K562	blood
7	chr2:178500000-178502200	Enhancers	Dnd41	blood
8	chr2:178500000-178503600	Weak transcription	Fetal Brain Male	brain
9	chr2:178500000-178504400	Weak transcription	Fetal Brain Female	brain
10	chr2:178500200-178505600	Weak transcription	Left Ventricle	heart

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links