Variant report

Variant	rs73978991
Chromosome Location	chr17:17508038-17508039
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 10 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:5)

rs_ID	r²[population]
rs73978989	1.00[AFR][1000 genomes]
rs73978993	1.00[AFR][1000 genomes]
rs73978994	1.00[AFR][1000 genomes]
rs73981004	1.00[AFR][1000 genomes]
rs73981006	1.00[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv907748	chr17:17412032-17782404	Weak transcription Enhancers Genic enhancers Flanking Active TSS Active TSS Strong transcription Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	89 gene(s)	inside rSNPs	diseases
2	nsv1065270	chr17:17430116-17823086	Weak transcription Flanking Active TSS Genic enhancers Enhancers Strong transcription Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	91 gene(s)	inside rSNPs	diseases
3	nsv543236	chr17:17430116-17823086	Bivalent Enhancer Strong transcription Weak transcription Flanking Active TSS Enhancers Active TSS Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	91 gene(s)	inside rSNPs	diseases
4	nsv833383	chr17:17464635-17509138	Strong transcription Enhancers Weak transcription Flanking Active TSS Genic enhancers Active TSS ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
5	nsv833384	chr17:17491483-17645648	Flanking Active TSS Bivalent Enhancer Enhancers Flanking Bivalent TSS/Enh Active TSS Genic enhancers Weak transcription Strong transcription Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	26 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:19 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr17:17496200-17508600	Weak transcription	Fetal Intestine Small	intestine
2	chr17:17496400-17508200	Weak transcription	Right Atrium	heart
3	chr17:17496400-17508600	Weak transcription	HSMMtube	muscle
4	chr17:17496600-17508600	Weak transcription	Fetal Stomach	stomach
5	chr17:17496600-17508800	Weak transcription	Osteobl	bone
6	chr17:17497000-17508200	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
7	chr17:17507000-17509800	Enhancers	K562	blood
8	chr17:17507000-17512600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
9	chr17:17507200-17508800	Weak transcription	Fetal Lung	lung
10	chr17:17507200-17509400	Enhancers	HepG2	liver
11	chr17:17507200-17510200	Weak transcription	iPS-15b Cell Line	embryonic stem cell
12	chr17:17507200-17512600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
13	chr17:17507400-17508600	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
14	chr17:17507600-17508600	Weak transcription	Fetal Heart	heart
15	chr17:17507600-17509800	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
16	chr17:17507800-17508400	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
17	chr17:17508000-17508800	Enhancers	Monocytes-CD14+_RO01746	blood
18	chr17:17508000-17510000	Enhancers	Primary neutrophils fromperipheralblood	blood
19	chr17:17508000-17510400	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links