Variant report

Variant	rs73979089
Chromosome Location	chr17:17028962-17028963
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr17:17023341..17025432-chr17:17027098..17029128,3	K562	blood:
2	chr17:17023341..17025938-chr17:17027098..17030092,2	K562	blood:
3	chr17:17028360..17030286-chr17:17031836..17034332,2	MCF-7	breast:

Extended variants
information (count: 4 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:2)

rs_ID	r²[population]
rs12452119	0.81[AFR][1000 genomes]
rs73979027	0.85[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv907728	chr17:17013189-17095487	Weak transcription Strong transcription Enhancers Genic enhancers Flanking Active TSS Transcr. at gene 5' and 3' Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	13 gene(s)	inside rSNPs	diseases
2	nsv984510	chr17:17015688-17048858	Enhancers Weak transcription Flanking Active TSS Strong transcription Genic enhancers Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:119 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr17:17006200-17033000	Weak transcription	Primary neutrophils fromperipheralblood	blood
2	chr17:17010000-17032000	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
3	chr17:17012000-17035200	Weak transcription	HUES64 Cell Line	embryonic stem cell
4	chr17:17015400-17035200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
5	chr17:17015800-17030000	Weak transcription	HUES6 Cell Line	embryonic stem cell
6	chr17:17019800-17031200	Weak transcription	Hela-S3	cervix
7	chr17:17022800-17029800	Weak transcription	Dnd41	blood
8	chr17:17023000-17030200	Weak transcription	Monocytes-CD14+_RO01746	blood
9	chr17:17023200-17034200	Weak transcription	NH-A	brain
10	chr17:17023600-17030600	Weak transcription	Osteobl	bone
11	chr17:17023800-17029800	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
12	chr17:17024200-17043200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
13	chr17:17024400-17029600	Weak transcription	Placenta Amnion	Placenta Amnion
14	chr17:17024400-17030200	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
15	chr17:17024400-17030200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
16	chr17:17024400-17030200	Weak transcription	HMEC	breast
17	chr17:17024400-17032800	Weak transcription	HUVEC	blood vessel
18	chr17:17024400-17039800	Weak transcription	Small Intestine	intestine
19	chr17:17024600-17029000	Weak transcription	NHLF	lung
20	chr17:17024600-17036000	Weak transcription	iPS-20b Cell Line	embryonic stem cell
21	chr17:17024600-17045600	Weak transcription	Pancreatic Islets	Pancreatic Islet
22	chr17:17024800-17030000	Weak transcription	Duodenum Mucosa	Duodenum
23	chr17:17024800-17030200	Weak transcription	Liver	Liver
24	chr17:17024800-17030200	Weak transcription	Duodenum Smooth Muscle	Duodenum
25	chr17:17024800-17030600	Weak transcription	HepG2	liver
26	chr17:17024800-17034200	Weak transcription	Fetal Kidney	kidney
27	chr17:17025000-17029400	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
28	chr17:17025000-17029800	Weak transcription	Colonic Mucosa	Colon
29	chr17:17025000-17029800	Weak transcription	Rectal Mucosa Donor 29	rectum
30	chr17:17025000-17030000	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
31	chr17:17025000-17030200	Weak transcription	Fetal Lung	lung
32	chr17:17025000-17030200	Weak transcription	Rectal Smooth Muscle	rectum
33	chr17:17025000-17031400	Weak transcription	Ovary	ovary
34	chr17:17025000-17031400	Weak transcription	Stomach Mucosa	stomach
35	chr17:17025200-17030200	Weak transcription	Rectal Mucosa Donor 31	rectum
36	chr17:17026000-17029400	Strong transcription	Fetal Intestine Small	intestine
37	chr17:17026000-17029600	Enhancers	Primary B cells from peripheral blood	blood
38	chr17:17026000-17030400	Enhancers	Left Ventricle	heart
39	chr17:17026200-17029000	Enhancers	Primary T helper cells PMA-I stimulated	--
40	chr17:17026200-17029000	Enhancers	Brain Anterior Caudate	brain
41	chr17:17026200-17029000	Enhancers	Skeletal Muscle Female	skeletal muscle
42	chr17:17026400-17029400	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
43	chr17:17026400-17034200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
44	chr17:17026600-17030200	Weak transcription	Colon Smooth Muscle	Colon
45	chr17:17026600-17030200	Weak transcription	Pancreas	Pancrea
46	chr17:17027000-17029400	Enhancers	Primary T helper naive cells fromperipheralblood	blood
47	chr17:17027200-17029000	Enhancers	Primary T killer naive cells fromperipheralblood	blood
48	chr17:17027200-17029200	Enhancers	Skeletal Muscle Male	skeletal muscle
49	chr17:17027200-17032600	Enhancers	Psoas Muscle	Psoas
50	chr17:17027400-17030200	Enhancers	Thymus	Thymus

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