Variant report

Variant	rs73979292
Chromosome Location	chr2:191426806-191426807
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr2:191426756..191429065-chr2:191435879..191437749,2	K562	blood:

Extended variants
information (count: 14 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs4129213	0.85[AFR][1000 genomes]
rs55684676	0.85[AFR][1000 genomes]
rs56123211	0.85[AFR][1000 genomes]
rs56171560	0.85[AFR][1000 genomes]
rs56218257	0.85[AFR][1000 genomes]
rs56392719	0.85[AFR][1000 genomes]
rs56872342	0.85[AFR][1000 genomes]
rs60204270	1.00[AMR][1000 genomes]
rs60268167	0.85[AFR][1000 genomes]
rs61407480	1.00[AMR][1000 genomes]
rs73979295	0.85[AFR][1000 genomes]
rs73979298	0.85[AFR][1000 genomes]
rs73979299	0.85[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv527324	chr2:191423989-191427736	Weak transcription Enhancers	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:30 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:191411000-191443000	Weak transcription	Right Atrium	heart
2	chr2:191417600-191427800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
3	chr2:191418000-191427000	Weak transcription	Pancreas	Pancrea
4	chr2:191419600-191427400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
5	chr2:191424600-191427000	Weak transcription	Breast Myoepithelial Primary Cells	Breast
6	chr2:191424800-191427000	Weak transcription	H1 Cell Line	embryonic stem cell
7	chr2:191424800-191427000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
8	chr2:191424800-191427000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
9	chr2:191424800-191427000	Weak transcription	Left Ventricle	heart
10	chr2:191425800-191427200	Enhancers	Fetal Intestine Large	intestine
11	chr2:191425800-191427200	Enhancers	Fetal Intestine Small	intestine
12	chr2:191425800-191428600	Enhancers	Stomach Mucosa	stomach
13	chr2:191426000-191427200	Enhancers	HUES6 Cell Line	embryonic stem cell
14	chr2:191426000-191427200	Enhancers	Rectal Mucosa Donor 31	rectum
15	chr2:191426000-191428800	Enhancers	K562	blood
16	chr2:191426200-191427000	Enhancers	Brain Angular Gyrus	brain
17	chr2:191426200-191427200	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
18	chr2:191426200-191427200	Enhancers	Duodenum Mucosa	Duodenum
19	chr2:191426200-191428600	Enhancers	Primary T helper cells PMA-I stimulated	--
20	chr2:191426400-191429600	Enhancers	Fetal Heart	heart
21	chr2:191426600-191427400	Enhancers	HUES48 Cell Line	embryonic stem cell
22	chr2:191426600-191427400	Enhancers	HUES64 Cell Line	embryonic stem cell
23	chr2:191426600-191428000	Enhancers	iPS-18 Cell Line	embryonic stem cell
24	chr2:191426800-191427200	Enhancers	H9 Cell Line	embryonic stem cell
25	chr2:191426800-191427200	Enhancers	Right Ventricle	heart
26	chr2:191426800-191427400	Enhancers	iPS-20b Cell Line	embryonic stem cell
27	chr2:191426800-191427800	Enhancers	iPS-15b Cell Line	embryonic stem cell
28	chr2:191426800-191428000	Enhancers	Primary T helper naive cells from peripheral blood	blood
29	chr2:191426800-191428200	Enhancers	Primary T cells from cord blood	blood
30	chr2:191426800-191428200	Enhancers	Cortex derived primary cultured neurospheres	brain

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links