Variant report

Variant	rs73979356
Chromosome Location	chr2:187611366-187611367
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr2:187605682..187607302-chr2:187609451..187611833,2	MCF-7	breast:
2	chr2:187605948..187608819-chr2:187609356..187611446,2	K562	blood:
3	chr2:187610996..187613793-chr2:187616587..187618211,2	K562	blood:
4	chr2:187610190..187612496-chr2:187615371..187618087,2	K562	blood:

Extended variants
information (count: 6 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:5)

rs_ID	r²[population]
rs60258744	1.00[AMR][1000 genomes]
rs61763155	1.00[AMR][1000 genomes]
rs62197740	1.00[AMR][1000 genomes]
rs62200585	1.00[AMR][1000 genomes]
rs73979378	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv428069	chr2:187575692-187766209	ZNF genes & repeats Weak transcription Active TSS Strong transcription Enhancers Genic enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region miRNA target site	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:50 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:187592200-187618600	Weak transcription	Osteobl	bone
2	chr2:187596600-187611400	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
3	chr2:187596600-187626200	Weak transcription	Stomach Smooth Muscle	stomach
4	chr2:187598600-187621200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
5	chr2:187599600-187631000	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
6	chr2:187600000-187613200	Weak transcription	Pancreas	Pancrea
7	chr2:187603000-187612800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
8	chr2:187603200-187626400	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
9	chr2:187603200-187626600	Weak transcription	Fetal Stomach	stomach
10	chr2:187603400-187612600	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
11	chr2:187603400-187612800	Weak transcription	Brain Anterior Caudate	brain
12	chr2:187603400-187613000	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
13	chr2:187603400-187626400	Weak transcription	Fetal Muscle Leg	muscle
14	chr2:187603600-187626600	Weak transcription	Left Ventricle	heart
15	chr2:187603800-187611800	Weak transcription	iPS-20b Cell Line	embryonic stem cell
16	chr2:187603800-187612800	Weak transcription	Brain Hippocampus Middle	brain
17	chr2:187603800-187621200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
18	chr2:187604000-187613200	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
19	chr2:187604000-187618600	Weak transcription	HUES64 Cell Line	embryonic stem cell
20	chr2:187604800-187613000	Weak transcription	Primary hematopoietic stem cells	blood
21	chr2:187605000-187626200	Weak transcription	NHDF-Ad	bronchial
22	chr2:187605000-187626400	Weak transcription	Fetal Muscle Trunk	muscle
23	chr2:187605400-187611400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
24	chr2:187605400-187612800	Weak transcription	Fetal Brain Female	brain
25	chr2:187605600-187619200	Weak transcription	Ovary	ovary
26	chr2:187606000-187612800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
27	chr2:187606200-187612400	Weak transcription	Brain Germinal Matrix	brain
28	chr2:187607000-187619600	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
29	chr2:187607400-187626200	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
30	chr2:187608600-187614800	Strong transcription	Cortex derived primary cultured neurospheres	brain
31	chr2:187608600-187616600	Weak transcription	Fetal Brain Male	brain
32	chr2:187608800-187621200	Weak transcription	iPS-15b Cell Line	embryonic stem cell
33	chr2:187609600-187617400	Weak transcription	Breast Myoepithelial Primary Cells	Breast
34	chr2:187609800-187616400	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
35	chr2:187609800-187621400	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
36	chr2:187610000-187619600	Weak transcription	NH-A	brain
37	chr2:187610000-187621200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
38	chr2:187610200-187612800	Weak transcription	Brain Cingulate Gyrus	brain
39	chr2:187610200-187612800	Weak transcription	HUVEC	blood vessel
40	chr2:187610200-187616200	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
41	chr2:187610400-187612600	Weak transcription	Brain Inferior Temporal Lobe	brain
42	chr2:187610400-187612600	Weak transcription	Brain Substantia Nigra	brain
43	chr2:187610800-187612600	Weak transcription	Fetal Lung	lung
44	chr2:187610800-187621200	Weak transcription	HUES6 Cell Line	embryonic stem cell
45	chr2:187611000-187611400	Enhancers	Brain Angular Gyrus	brain
46	chr2:187611000-187611600	Active TSS	GM12878-XiMat	blood
47	chr2:187611000-187621400	Weak transcription	H1 Cell Line	embryonic stem cell
48	chr2:187611000-187626400	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
49	chr2:187611000-187628800	Weak transcription	Pancreatic Islets	Pancreatic Islet
50	chr2:187611000-187628800	Weak transcription	HSMM	muscle

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