Variant report

Variant	rs73979405
Chromosome Location	chr2:172436672-172436673
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 9 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:8)

rs_ID	r²[population]
rs10208808	1.00[AMR][1000 genomes]
rs56195778	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs56315615	1.00[AMR][1000 genomes]
rs57201420	1.00[AMR][1000 genomes]
rs73979406	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73979415	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73979420	1.00[AMR][1000 genomes]
rs73979427	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv1832950	chr2:172283513-172488111	Flanking Active TSS Strong transcription Weak transcription Enhancers Active TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	29 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:172436200-172436800	Enhancers	NHEK	skin
2	chr2:172436600-172439800	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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