Variant report

Variant	rs73979856
Chromosome Location	chr2:188203427-188203428
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 11 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:6)

rs_ID	r²[population]
rs3771074	0.87[AFR][1000 genomes]
rs6748155	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73979871	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73979873	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73981207	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7587307	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv949700	chr2:187713412-188361211	Flanking Active TSS Strong transcription Enhancers ZNF genes & repeats Weak transcription Active TSS Bivalent/Poised TSS Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	8 gene(s)	inside rSNPs	diseases
2	nsv1003061	chr2:187950057-188282330	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Strong transcription Active TSS Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
3	nsv1000617	chr2:187950057-188290511	Enhancers Weak transcription Strong transcription Flanking Active TSS ZNF genes & repeats Genic enhancers Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
4	nsv533935	chr2:188089148-188284766	Weak transcription Enhancers Strong transcription ZNF genes & repeats Flanking Active TSS Genic enhancers Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
5	nsv834487	chr2:188182556-188353363	Strong transcription Enhancers Weak transcription Active TSS Flanking Active TSS Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:12 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:188203200-188203800	Enhancers	Breast Myoepithelial Primary Cells	Breast
2	chr2:188203200-188203800	Enhancers	Ovary	ovary
3	chr2:188203200-188218200	Weak transcription	Aorta	Aorta
4	chr2:188203400-188203600	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
5	chr2:188203400-188203600	Enhancers	Spleen	Spleen
6	chr2:188203400-188203800	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
7	chr2:188203400-188203800	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
8	chr2:188203400-188203800	Bivalent Enhancer	Fetal Muscle Trunk	muscle
9	chr2:188203400-188203800	Enhancers	Placenta	Placenta
10	chr2:188203400-188203800	Enhancers	Gastric	stomach
11	chr2:188203400-188203800	Enhancers	Left Ventricle	heart
12	chr2:188203400-188203800	Enhancers	Lung	lung

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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