Variant report

Variant	rs73981871
Chromosome Location	chr17:20150825-20150826
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr17:20144551..20147091-chr17:20150035..20152753,2	MCF-7	breast:

Extended variants
information (count: 29 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs28563081	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7212886	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7214833	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7223481	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73981866	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9325893	1.00[AMR][1000 genomes]
rs9890419	1.00[AMR][1000 genomes]
rs9894809	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9910699	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9911147	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9913192	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:18 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1062853	chr17:19547912-20206601	Enhancers Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Genic enhancers Strong transcription ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	63 gene(s)	inside rSNPs	diseases
2	nsv907868	chr17:19768924-20217122	Enhancers Flanking Active TSS ZNF genes & repeats Strong transcription Weak transcription Active TSS Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	25 gene(s)	inside rSNPs	diseases
3	nsv1060337	chr17:19828636-20204872	Active TSS Weak transcription Flanking Active TSS Bivalent Enhancer Enhancers Flanking Bivalent TSS/Enh Genic enhancers Strong transcription ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	21 gene(s)	inside rSNPs	diseases
4	nsv543257	chr17:19828636-20204872	Enhancers Weak transcription Flanking Bivalent TSS/Enh Flanking Active TSS Transcr. at gene 5' and 3' Genic enhancers Strong transcription Active TSS ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	21 gene(s)	inside rSNPs	diseases
5	nsv1067100	chr17:20007480-20464520	Flanking Active TSS Weak transcription Strong transcription Enhancers Genic enhancers ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	37 gene(s)	inside rSNPs	diseases
6	nsv543260	chr17:20007480-20464520	Strong transcription Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	37 gene(s)	inside rSNPs	diseases
7	nsv482830	chr17:20012748-20169153	Weak transcription Strong transcription Enhancers Genic enhancers Active TSS Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
8	nsv428669	chr17:20071969-20245033	Weak transcription Enhancers Flanking Active TSS Strong transcription Genic enhancers ZNF genes & repeats Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
9	nsv1064854	chr17:20086562-20225751	Enhancers Weak transcription Genic enhancers Strong transcription Flanking Active TSS ZNF genes & repeats Active TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
10	esv2761953	chr17:20086562-20225763	Enhancers ZNF genes & repeats Weak transcription Strong transcription Flanking Active TSS Genic enhancers Active TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
11	nsv1063833	chr17:20088333-20206601	Enhancers Weak transcription Strong transcription Genic enhancers ZNF genes & repeats Flanking Active TSS Active TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
12	nsv574581	chr17:20088492-20699545	Strong transcription Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Genic enhancers Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	53 gene(s)	inside rSNPs	diseases
13	nsv1065363	chr17:20118499-20162888	Enhancers Strong transcription Weak transcription Genic enhancers ZNF genes & repeats Flanking Active TSS Transcr. at gene 5' and 3'	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
14	nsv1059774	chr17:20118499-20163560	Weak transcription Enhancers Genic enhancers Strong transcription ZNF genes & repeats Flanking Active TSS Transcr. at gene 5' and 3'	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
15	nsv1062124	chr17:20139384-20206601	Weak transcription Genic enhancers Enhancers Strong transcription ZNF genes & repeats Flanking Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
16	nsv543261	chr17:20139384-20206601	Weak transcription Enhancers Bivalent Enhancer Flanking Active TSS Strong transcription Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
17	nsv1065758	chr17:20141912-20464366	Enhancers Strong transcription Active TSS Weak transcription Genic enhancers Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	29 gene(s)	inside rSNPs	diseases
18	nsv543262	chr17:20141912-20464366	Enhancers Weak transcription Active TSS Strong transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	29 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:99 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr17:20111600-20166000	Weak transcription	Right Ventricle	heart
2	chr17:20128800-20157000	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
3	chr17:20129200-20161600	Weak transcription	Fetal Brain Female	brain
4	chr17:20129600-20161600	Weak transcription	Placenta Amnion	Placenta Amnion
5	chr17:20130600-20161200	Weak transcription	Skeletal Muscle Male	skeletal muscle
6	chr17:20130600-20170000	Weak transcription	K562	blood
7	chr17:20130600-20170200	Weak transcription	Skeletal Muscle Female	skeletal muscle
8	chr17:20131800-20164400	Strong transcription	Monocytes-CD14+_RO01746	blood
9	chr17:20132600-20151200	Weak transcription	NH-A	brain
10	chr17:20136000-20151400	Weak transcription	Brain Germinal Matrix	brain
11	chr17:20136000-20151400	Weak transcription	Esophagus	oesophagus
12	chr17:20136200-20151200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
13	chr17:20136200-20151200	Weak transcription	Colonic Mucosa	Colon
14	chr17:20136200-20151200	Weak transcription	GM12878-XiMat	blood
15	chr17:20136200-20157200	Weak transcription	Fetal Muscle Trunk	muscle
16	chr17:20136200-20161600	Weak transcription	Lung	lung
17	chr17:20136400-20151200	Weak transcription	Pancreas	Pancrea
18	chr17:20136400-20151400	Weak transcription	Left Ventricle	heart
19	chr17:20136400-20160800	Weak transcription	Fetal Stomach	stomach
20	chr17:20136400-20161200	Weak transcription	Fetal Lung	lung
21	chr17:20136400-20209800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
22	chr17:20137600-20151000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
23	chr17:20138200-20157400	Weak transcription	Gastric	stomach
24	chr17:20138400-20151400	Weak transcription	NHEK	skin
25	chr17:20138400-20165200	Weak transcription	Primary B cells from cord blood	blood
26	chr17:20138600-20151200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
27	chr17:20138800-20151200	Weak transcription	Fetal Intestine Large	intestine
28	chr17:20139600-20151200	Weak transcription	Primary hematopoietic stem cells	blood
29	chr17:20139600-20151200	Weak transcription	Rectal Mucosa Donor 29	rectum
30	chr17:20139600-20151400	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
31	chr17:20139600-20152400	Weak transcription	Fetal Muscle Leg	muscle
32	chr17:20140400-20160800	Weak transcription	Rectal Smooth Muscle	rectum
33	chr17:20141400-20151000	Weak transcription	Primary hematopoietic stem cells short term culture	blood
34	chr17:20146600-20151200	Strong transcription	Cortex derived primary cultured neurospheres	brain
35	chr17:20148200-20151000	Enhancers	Primary T killer naive cells fromperipheralblood	blood
36	chr17:20148200-20151400	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
37	chr17:20148200-20157400	Strong transcription	iPS-20b Cell Line	embryonic stem cell
38	chr17:20148200-20165000	Strong transcription	HUES64 Cell Line	embryonic stem cell
39	chr17:20148200-20165600	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
40	chr17:20148400-20151400	Enhancers	Primary T helper cells PMA-I stimulated	--
41	chr17:20148400-20151800	Strong transcription	H9 Cell Line	embryonic stem cell
42	chr17:20148400-20152000	Strong transcription	iPS-15b Cell Line	embryonic stem cell
43	chr17:20148400-20152200	Strong transcription	Rectal Mucosa Donor 31	rectum
44	chr17:20148400-20152400	Strong transcription	IMR90 fetal lung fibroblasts Cell Line	lung
45	chr17:20148400-20161200	Weak transcription	Muscle Satellite Cultured Cells	--
46	chr17:20148400-20161600	Strong transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
47	chr17:20148400-20161600	Strong transcription	HUES6 Cell Line	embryonic stem cell
48	chr17:20148600-20151200	Strong transcription	Primary monocytes fromperipheralblood	blood
49	chr17:20148600-20151200	Strong transcription	A549	lung
50	chr17:20148600-20151600	Enhancers	Primary T helper cells fromperipheralblood	blood

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