Variant report

Variant	rs73982010
Chromosome Location	chr2:190151026-190151027
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr2:190007040..190008928-chr2:190150245..190153733,35	MCF-7	breast:
2	chr2:190143476..190146248-chr2:190148193..190151075,3	MCF-7	breast:
3	chr2:190086588..190088332-chr2:190150217..190152218,2	MCF-7	breast:
4	chr2:190087466..190090346-chr2:190148672..190151105,2	MCF-7	breast:
5	chr2:190029422..190031666-chr2:190149954..190151681,2	MCF-7	breast:
6	chr2:190088767..190093088-chr2:190148429..190152827,7	MCF-7	breast:

Extended variants
information (count: 9 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:5)

rs_ID	r²[population]
rs56730520	1.00[AFR][1000 genomes]
rs60528634	1.00[AFR][1000 genomes]
rs73978611	1.00[AFR][1000 genomes]
rs73978619	1.00[AFR][1000 genomes]
rs73978627	1.00[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv533029	chr2:189812229-190554339	Active TSS Enhancers Weak transcription Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	40 gene(s)	inside rSNPs	diseases
2	nsv875613	chr2:189999011-190324685	Enhancers Weak transcription Active TSS Flanking Active TSS Genic enhancers Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3' Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	25 gene(s)	inside rSNPs	diseases
3	nsv875614	chr2:190110841-190254758	Weak transcription Flanking Active TSS Enhancers ZNF genes & repeats Strong transcription Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
4	nsv519299	chr2:190150205-190151140	Enhancers Flanking Active TSS Active TSS Weak transcription	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:27 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:190149200-190153800	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
2	chr2:190149400-190152400	Enhancers	Hela-S3	cervix
3	chr2:190149400-190153400	Enhancers	NHDF-Ad	bronchial
4	chr2:190149400-190153600	Enhancers	NH-A	brain
5	chr2:190149400-190153600	Enhancers	NHLF	lung
6	chr2:190149600-190151400	Flanking Active TSS	A549	lung
7	chr2:190149600-190153200	Enhancers	HSMM	muscle
8	chr2:190149600-190153400	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
9	chr2:190149800-190153200	Enhancers	Rectal Smooth Muscle	rectum
10	chr2:190150000-190152400	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
11	chr2:190150000-190153000	Enhancers	Muscle Satellite Cultured Cells	--
12	chr2:190150200-190151200	Enhancers	Placenta Amnion	Placenta Amnion
13	chr2:190150200-190151400	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
14	chr2:190150200-190153400	Enhancers	HSMMtube	muscle
15	chr2:190150400-190152400	Weak transcription	Duodenum Smooth Muscle	Duodenum
16	chr2:190150600-190152400	Weak transcription	Colon Smooth Muscle	Colon
17	chr2:190150600-190152400	Enhancers	HMEC	breast
18	chr2:190150800-190151200	Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
19	chr2:190150800-190151400	Enhancers	NHEK	skin
20	chr2:190150800-190151600	Enhancers	HUVEC	blood vessel
21	chr2:190150800-190158200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
22	chr2:190151000-190151200	Enhancers	ES-I3 Cell Line	embryonic stem cell
23	chr2:190151000-190151200	Enhancers	Osteobl	bone
24	chr2:190151000-190152000	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
25	chr2:190151000-190152400	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
26	chr2:190151000-190153200	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
27	chr2:190151000-190153600	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived

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