Variant report

rSNPs within LD-proxies of this variant (count:28)

rs_ID	r²[population]
rs10164448	0.81[EUR][1000 genomes]
rs10198505	0.84[EUR][1000 genomes]
rs10755003	0.84[EUR][1000 genomes]
rs1464262	0.84[EUR][1000 genomes]
rs1473999	0.91[AFR][1000 genomes];0.80[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs1515867	0.84[EUR][1000 genomes]
rs1606931	0.84[EUR][1000 genomes]
rs16831217	0.84[EUR][1000 genomes]
rs16831356	0.80[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs16841601	0.84[EUR][1000 genomes]
rs17270980	0.84[EUR][1000 genomes]
rs2030293	0.84[EUR][1000 genomes]
rs2102874	0.84[EUR][1000 genomes]
rs2176649	0.84[AFR][1000 genomes];0.80[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs2351634	0.94[AFR][1000 genomes];0.80[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs4031918	0.84[EUR][1000 genomes]
rs58288282	0.81[EUR][1000 genomes]
rs58796942	0.80[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs6434335	0.91[AFR][1000 genomes];0.80[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs73978617	0.81[EUR][1000 genomes]
rs73978620	0.80[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs73978626	0.80[AMR][1000 genomes]
rs73982009	0.84[EUR][1000 genomes]
rs7591652	0.84[EUR][1000 genomes]
rs7596033	0.84[EUR][1000 genomes]
rs870922	0.84[EUR][1000 genomes]
rs939157	0.80[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs939159	0.94[AFR][1000 genomes];0.80[AMR][1000 genomes];0.84[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv533029	chr2:189812229-190554339	Active TSS Enhancers Weak transcription Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	40 gene(s)	inside rSNPs	diseases
2	nsv875613	chr2:189999011-190324685	Enhancers Weak transcription Active TSS Flanking Active TSS Genic enhancers Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3' Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	25 gene(s)	inside rSNPs	diseases
3	nsv875614	chr2:190110841-190254758	Weak transcription Flanking Active TSS Enhancers ZNF genes & repeats Strong transcription Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:13 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:190152400-190162400	Weak transcription	HMEC	breast
2	chr2:190153600-190162800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
3	chr2:190153800-190162800	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
4	chr2:190154800-190160200	Weak transcription	Primary T killer memory cells from peripheral blood	blood
5	chr2:190158200-190158400	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
6	chr2:190158200-190158400	Enhancers	HSMM	muscle
7	chr2:190158200-190158600	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
8	chr2:190158200-190158600	Enhancers	Muscle Satellite Cultured Cells	--
9	chr2:190158200-190158600	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
10	chr2:190158200-190159000	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
11	chr2:190158200-190159000	Enhancers	NHDF-Ad	bronchial
12	chr2:190158200-190159000	Enhancers	Osteobl	bone
13	chr2:190158200-190159600	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived

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