Variant report

Variant	rs73983078
Chromosome Location	chr17:38689032-38689033
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:27)
LncRNA
region (count:1)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:27 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr17:38689023..38690777-chr17:38705235..38707470,2	MCF-7	breast:
2	chr17:38655284..38659044-chr17:38686692..38691600,6	MCF-7	breast:
3	chr17:38688054..38689798-chr17:39833411..39836205,2	K562	blood:
4	chr17:38555985..38556665-chr17:38688321..38689055,2	K562	blood:
5	chr17:38569158..38571862-chr17:38686767..38689398,2	K562	blood:
6	chr17:38572042..38574329-chr17:38688910..38690957,2	MCF-7	breast:
7	chr17:38683152..38684806-chr17:38688002..38689977,2	K562	blood:
8	chr17:38629230..38633367-chr17:38687189..38689523,3	MCF-7	breast:
9	chr17:38687399..38689381-chr17:38717054..38718959,2	MCF-7	breast:
10	chr17:38567583..38575027-chr17:38687434..38693796,7	K562	blood:
11	chr17:38595245..38602220-chr17:38686762..38692136,14	MCF-7	breast:
12	chr17:38685508..38688282-chr17:38688422..38690348,2	MCF-7	breast:
13	chr17:38615426..38618640-chr17:38688722..38692627,3	MCF-7	breast:
14	chr17:38687442..38690186-chr17:38709464..38712029,2	K562	blood:
15	chr17:38597490..38601746-chr17:38686793..38692185,8	MCF-7	breast:
16	chr17:38514587..38516570-chr17:38688574..38692395,3	K562	blood:
17	chr17:38573012..38575027-chr17:38685953..38689242,3	K562	blood:
18	chr17:38688685..38691278-chr17:38771780..38774213,2	MCF-7	breast:
19	chr17:38572709..38573531-chr17:38688353..38689310,2	K562	blood:
20	chr17:38681809..38684806-chr17:38685907..38689977,4	K562	blood:
21	chr17:38519019..38521573-chr17:38688348..38691250,5	K562	blood:
22	chr17:38686790..38691109-chr17:38691407..38694438,4	K562	blood:
23	chr17:38687797..38689749-chr17:38691599..38693505,2	MCF-7	breast:
24	chr17:38519019..38522951-chr17:38688553..38692204,5	K562	blood:
25	chr17:38475026..38477507-chr17:38687765..38689324,2	MCF-7	breast:
26	chr17:38504397..38506144-chr17:38688587..38690535,2	K562	blood:
27	chr17:38599626..38601535-chr17:38686710..38689693,2	K562	blood:

(count:1 , 50 per page) page: 1

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-CCR7-1	chr17:38688846-38689331	XLOC_012471

No data

Variant related genes	Relation type
ENSG00000131746	Chromatin interaction
ENSG00000141753	Chromatin interaction
ENSG00000240125	Chromatin interaction
ENSG00000183153	Chromatin interaction
ENSG00000266088	Chromatin interaction
ENSG00000131747	Chromatin interaction
ENSG00000126353	Chromatin interaction

Extended variants
information (count: 11 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:10)

rs_ID	r²[population]
rs1072070	1.00[ASN][1000 genomes]
rs11871009	1.00[ASN][1000 genomes]
rs4890088	0.83[ASN][1000 genomes]
rs60411936	1.00[ASN][1000 genomes]
rs7208120	1.00[ASN][1000 genomes]
rs7208316	1.00[ASN][1000 genomes]
rs7212543	1.00[ASN][1000 genomes]
rs73983076	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs8064741	1.00[ASN][1000 genomes]
rs8077724	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1058185	chr17:38629339-38689908	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Genic enhancers Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats Strong transcription Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:90 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr17:38683200-38689200	Weak transcription	Left Ventricle	heart
2	chr17:38683600-38690000	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
3	chr17:38683800-38691000	Enhancers	Primary T helper cells fromperipheralblood	blood
4	chr17:38683800-38691200	Enhancers	Primary T killer naive cells fromperipheralblood	blood
5	chr17:38684200-38689200	Enhancers	Primary T helper cells PMA-I stimulated	--
6	chr17:38684200-38689200	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
7	chr17:38684200-38691200	Enhancers	Primary T helper naive cells from peripheral blood	blood
8	chr17:38684200-38691200	Enhancers	Primary T helper naive cells fromperipheralblood	blood
9	chr17:38684200-38691400	Enhancers	Primary T killer memory cells from peripheral blood	blood
10	chr17:38684200-38697000	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
11	chr17:38684600-38689600	Enhancers	Primary T cells from cord blood	blood
12	chr17:38685200-38691400	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
13	chr17:38686200-38689200	Enhancers	Hela-S3	cervix
14	chr17:38686400-38691200	Enhancers	Primary B cells from peripheral blood	blood
15	chr17:38686400-38691200	Enhancers	Osteobl	bone
16	chr17:38686400-38698200	Enhancers	Breast Myoepithelial Primary Cells	Breast
17	chr17:38686600-38690000	Enhancers	Primary T cells effector/memory enriched fromperipheralblood	blood
18	chr17:38686600-38690600	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
19	chr17:38686600-38690600	Enhancers	HMEC	breast
20	chr17:38686600-38691200	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
21	chr17:38686600-38692600	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
22	chr17:38686600-38697200	Enhancers	Fetal Thymus	thymus
23	chr17:38686800-38689400	Enhancers	Dnd41	blood
24	chr17:38686800-38691000	Enhancers	Thymus	Thymus
25	chr17:38686800-38691200	Enhancers	Primary B cells from cord blood	blood
26	chr17:38687000-38689200	Enhancers	NHEK	skin
27	chr17:38687000-38689800	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
28	chr17:38687000-38690400	Enhancers	Primary T regulatory cells fromperipheralblood	blood
29	chr17:38687000-38692800	Weak transcription	Placenta Amnion	Placenta Amnion
30	chr17:38687000-38696600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
31	chr17:38687200-38689800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
32	chr17:38687200-38690800	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
33	chr17:38687200-38691200	Enhancers	Primary T cells fromperipheralblood	blood
34	chr17:38687400-38689200	Weak transcription	HUES6 Cell Line	embryonic stem cell
35	chr17:38687400-38690000	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
36	chr17:38687400-38690600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
37	chr17:38687400-38698800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
38	chr17:38687600-38689800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
39	chr17:38687800-38689400	Flanking Active TSS	GM12878-XiMat	blood
40	chr17:38687800-38691000	Enhancers	Adipose Nuclei	Adipose
41	chr17:38687800-38691200	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
42	chr17:38688000-38689400	Enhancers	K562	blood
43	chr17:38688000-38690600	Enhancers	Rectal Mucosa Donor 29	rectum
44	chr17:38688000-38690600	Enhancers	Rectal Mucosa Donor 31	rectum
45	chr17:38688000-38691400	Enhancers	Skeletal Muscle Male	skeletal muscle
46	chr17:38688000-38692600	Weak transcription	Small Intestine	intestine
47	chr17:38688200-38689200	Weak transcription	Placenta	Placenta
48	chr17:38688200-38689200	Weak transcription	Sigmoid Colon	Sigmoid Colon
49	chr17:38688200-38689400	Weak transcription	Right Atrium	heart
50	chr17:38688200-38689800	Weak transcription	Fetal Muscle Trunk	muscle

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