Variant report

Variant	rs73986306
Chromosome Location	chr2:208538324-208538325
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 14 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs16840112	1.00[AMR][1000 genomes]
rs55687340	1.00[AMR][1000 genomes]
rs58524730	1.00[AMR][1000 genomes]
rs59975915	1.00[AMR][1000 genomes]
rs73983604	1.00[AMR][1000 genomes]
rs73983605	1.00[AMR][1000 genomes]
rs73983606	1.00[AMR][1000 genomes]
rs73986311	1.00[AMR][1000 genomes]
rs73986332	1.00[AMR][1000 genomes]
rs73986348	1.00[AMR][1000 genomes]
rs73986349	1.00[AMR][1000 genomes]
rs73986350	1.00[AMR][1000 genomes]
rs73986351	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv875742	chr2:208489101-208618400	Flanking Active TSS Weak transcription Enhancers Active TSS Strong transcription Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	33 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:17 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:208526000-208539600	Weak transcription	H9 Cell Line	embryonic stem cell
2	chr2:208530400-208541400	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
3	chr2:208532400-208541400	Weak transcription	Primary hematopoietic stem cells short term culture	blood
4	chr2:208534200-208540800	Weak transcription	GM12878-XiMat	blood
5	chr2:208535000-208541600	Weak transcription	Primary B cells from peripheral blood	blood
6	chr2:208536000-208541000	Weak transcription	Osteobl	bone
7	chr2:208536000-208541400	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
8	chr2:208536200-208538800	Weak transcription	H1 Cell Line	embryonic stem cell
9	chr2:208536200-208545800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
10	chr2:208536800-208539600	Weak transcription	A549	lung
11	chr2:208538000-208538800	Enhancers	HUES64 Cell Line	embryonic stem cell
12	chr2:208538000-208538800	Enhancers	iPS-18 Cell Line	embryonic stem cell
13	chr2:208538000-208538800	Enhancers	iPS-20b Cell Line	embryonic stem cell
14	chr2:208538000-208540000	Enhancers	ES-I3 Cell Line	embryonic stem cell
15	chr2:208538000-208540000	Enhancers	HUES48 Cell Line	embryonic stem cell
16	chr2:208538200-208538400	Enhancers	HUES6 Cell Line	embryonic stem cell
17	chr2:208538200-208538800	Enhancers	iPS-15b Cell Line	embryonic stem cell

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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