Variant report

Variant	rs73986677
Chromosome Location	chr2:209875431-209875432
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 30 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:21)

rs_ID	r²[population]
rs55836807	0.83[AMR][1000 genomes]
rs55984377	0.83[AMR][1000 genomes]
rs56784517	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs57099283	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs57820610	1.00[AMR][1000 genomes]
rs58494981	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs60615254	0.83[AMR][1000 genomes]
rs60788347	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73983904	1.00[AMR][1000 genomes]
rs73986658	1.00[AMR][1000 genomes]
rs73986659	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73986660	0.83[AMR][1000 genomes]
rs73986662	1.00[AFR][1000 genomes]
rs73986670	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73986671	1.00[AMR][1000 genomes]
rs73986672	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73986674	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73986676	1.00[AMR][1000 genomes]
rs73986687	1.00[AMR][1000 genomes]
rs73986689	0.83[AMR][1000 genomes]
rs73986695	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:9 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1012184	chr2:209755847-210049331	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Strong transcription Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
2	nsv536131	chr2:209755847-210049331	Enhancers Weak transcription Strong transcription Bivalent Enhancer ZNF genes & repeats Genic enhancers Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
3	esv3487576	chr2:209768379-209947296	Enhancers Weak transcription ZNF genes & repeats Bivalent Enhancer Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
4	esv3487577	chr2:209768379-209947296	ZNF genes & repeats Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
5	nsv1009924	chr2:209805661-210042572	Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
6	nsv875760	chr2:209817526-209929978	Enhancers Bivalent Enhancer Weak transcription ZNF genes & repeats	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
7	nsv1002578	chr2:209836205-210026339	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
8	nsv536132	chr2:209836205-210026339	Bivalent Enhancer ZNF genes & repeats Weak transcription Enhancers Genic enhancers Active TSS Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
9	nsv526239	chr2:209864064-209877078	Weak transcription Enhancers ZNF genes & repeats	n/a	n/a	inside rSNPs	diseases

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:209873800-209876000	Enhancers	ES-I3 Cell Line	embryonic stem cell
2	chr2:209873800-209876200	Enhancers	iPS-15b Cell Line	embryonic stem cell
3	chr2:209874200-209876000	Enhancers	HUES64 Cell Line	embryonic stem cell
4	chr2:209874400-209875600	Weak transcription	iPS-20b Cell Line	embryonic stem cell
5	chr2:209874600-209875600	Weak transcription	HUES6 Cell Line	embryonic stem cell
6	chr2:209875000-209876000	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
7	chr2:209875200-209876000	Enhancers	iPS-18 Cell Line	embryonic stem cell
8	chr2:209875200-209876200	Enhancers	HUES48 Cell Line	embryonic stem cell

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links