Variant report

Variant	rs73988811
Chromosome Location	chr17:45826524-45826525
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 19 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:16)

rs_ID	r²[population]
rs56239340	1.00[EUR][1000 genomes]
rs57483258	1.00[EUR][1000 genomes]
rs72648867	0.94[AFR][1000 genomes]
rs72648868	0.94[AFR][1000 genomes]
rs72648869	0.94[AFR][1000 genomes]
rs73319718	1.00[EUR][1000 genomes]
rs73985186	1.00[EUR][1000 genomes]
rs73985189	1.00[EUR][1000 genomes]
rs73988809	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73988823	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73988830	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73988840	1.00[EUR][1000 genomes]
rs73988847	1.00[EUR][1000 genomes]
rs73988853	1.00[EUR][1000 genomes]
rs8066161	1.00[EUR][1000 genomes]
rs8071638	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv498122	chr17:45763853-46064327	Enhancers Flanking Active TSS Bivalent Enhancer Weak transcription Strong transcription Flanking Bivalent TSS/Enh Active TSS Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	67 gene(s)	inside rSNPs	diseases
2	nsv2071	chr17:45801503-45844229	Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer Enhancers Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Weak transcription Genic enhancers Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region miRNA target site	3 gene(s)	inside rSNPs	diseases
3	esv1811624	chr17:45825220-45846505	Weak transcription Enhancers Genic enhancers Bivalent Enhancer Strong transcription	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr17:45820600-45830400	Weak transcription	Primary T killer memory cells from peripheral blood	blood
2	chr17:45823600-45826800	Weak transcription	Primary B cells from peripheral blood	blood
3	chr17:45824400-45831800	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
4	chr17:45825800-45828400	Weak transcription	Primary T cells fromperipheralblood	blood
5	chr17:45826000-45826600	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
6	chr17:45826400-45827200	Enhancers	Primary B cells from cord blood	blood

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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