Variant report

Variant	rs73991955
Chromosome Location	chr17:60073328-60073329
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr17:60072295..60073796-chr17:60076891..60078526,2	MCF-7	breast:
2	chr17:60072256..60075047-chr17:60141018..60143090,2	MCF-7	breast:
3	chr17:60071623..60073698-chr17:60077133..60079177,2	K562	blood:
4	chr17:60053142..60056051-chr17:60072717..60074379,2	MCF-7	breast:
5	chr17:60072073..60073825-chr17:60107500..60109184,2	MCF-7	breast:
6	chr17:60065234..60067787-chr17:60072836..60076599,3	MCF-7	breast:

Variant related genes	Relation type
ENSG00000108510	Chromatin interaction

Extended variants
information (count: 8 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:6)

rs_ID	r²[population]
rs16945766	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs28479677	1.00[AMR][1000 genomes]
rs61552645	0.90[AFR][1000 genomes]
rs6504080	0.80[AMR][1000 genomes]
rs6504083	1.00[EUR][1000 genomes]
rs8068199	0.80[AMR][1000 genomes];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3378293	chr17:59744117-60124899	ZNF genes & repeats Strong transcription Weak transcription Flanking Active TSS Active TSS Enhancers Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	175 gene(s)	inside rSNPs	diseases
2	nsv916786	chr17:59890834-60103687	Weak transcription Enhancers Strong transcription Active TSS Flanking Active TSS Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	116 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:126 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr17:60018000-60073400	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
2	chr17:60018800-60073600	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
3	chr17:60020800-60073800	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
4	chr17:60021200-60097000	Strong transcription	Dnd41	blood
5	chr17:60021800-60073600	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
6	chr17:60025400-60074200	Strong transcription	Liver	Liver
7	chr17:60025400-60107600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
8	chr17:60033000-60128400	Weak transcription	Stomach Mucosa	stomach
9	chr17:60036000-60074000	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
10	chr17:60042800-60105200	Weak transcription	Psoas Muscle	Psoas
11	chr17:60048600-60074200	Strong transcription	Primary monocytes fromperipheralblood	blood
12	chr17:60048800-60097600	Strong transcription	Monocytes-CD14+_RO01746	blood
13	chr17:60050200-60100800	Weak transcription	Small Intestine	intestine
14	chr17:60051600-60073800	Strong transcription	HUES64 Cell Line	embryonic stem cell
15	chr17:60051800-60073600	Strong transcription	Primary B cells from peripheral blood	blood
16	chr17:60052600-60073400	Strong transcription	Duodenum Mucosa	Duodenum
17	chr17:60053600-60073600	Strong transcription	Primary T cells fromperipheralblood	blood
18	chr17:60054000-60074000	Strong transcription	Primary T helper cells fromperipheralblood	blood
19	chr17:60055200-60074000	Strong transcription	Primary T cells from cord blood	blood
20	chr17:60055600-60073800	Strong transcription	HUES6 Cell Line	embryonic stem cell
21	chr17:60059000-60088000	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
22	chr17:60059800-60075200	Weak transcription	Fetal Heart	heart
23	chr17:60060400-60073800	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
24	chr17:60060400-60081800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
25	chr17:60060400-60086800	Weak transcription	H9 Cell Line	embryonic stem cell
26	chr17:60060400-60088000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
27	chr17:60060400-60090600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
28	chr17:60060400-60096200	Weak transcription	Fetal Brain Male	brain
29	chr17:60060400-60098800	Weak transcription	Gastric	stomach
30	chr17:60060400-60099800	Weak transcription	Aorta	Aorta
31	chr17:60061600-60099600	Weak transcription	iPS-15b Cell Line	embryonic stem cell
32	chr17:60062200-60073400	Weak transcription	Rectal Smooth Muscle	rectum
33	chr17:60062400-60081600	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
34	chr17:60062400-60086400	Weak transcription	Placenta Amnion	Placenta Amnion
35	chr17:60062400-60106800	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
36	chr17:60064000-60073400	Weak transcription	Pancreatic Islets	Pancreatic Islet
37	chr17:60064200-60073400	Weak transcription	Colon Smooth Muscle	Colon
38	chr17:60064800-60088200	Weak transcription	Pancreas	Pancrea
39	chr17:60066000-60073400	Weak transcription	Brain Anterior Caudate	brain
40	chr17:60066000-60074600	Weak transcription	NHDF-Ad	bronchial
41	chr17:60066800-60073600	Strong transcription	HSMM	muscle
42	chr17:60067200-60074800	Strong transcription	HUES48 Cell Line	embryonic stem cell
43	chr17:60067400-60074400	Weak transcription	HSMMtube	muscle
44	chr17:60067400-60081600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
45	chr17:60067800-60073400	Weak transcription	Brain Substantia Nigra	brain
46	chr17:60067800-60075000	Weak transcription	Brain Inferior Temporal Lobe	brain
47	chr17:60067800-60086400	Weak transcription	HMEC	breast
48	chr17:60068400-60081600	Weak transcription	Fetal Kidney	kidney
49	chr17:60069200-60073800	Strong transcription	A549	lung
50	chr17:60069200-60107600	Weak transcription	Spleen	Spleen

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