Variant report

Variant	rs73998322
Chromosome Location	chr2:234163088-234163089
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr2:234161754..234164546-chr2:234176635..234178201,2	K562	blood:
2	chr2:234161693..234166047-chr2:234167019..234170688,4	MCF-7	breast:
3	chr2:234162476..234164619-chr2:234172094..234174882,2	MCF-7	breast:
4	chr2:234161285..234164496-chr2:234179412..234182858,4	MCF-7	breast:
5	chr2:234161323..234164097-chr2:234164693..234167813,4	K562	blood:

Variant related genes	Relation type
ENSG00000085978	Chromatin interaction

Extended variants
information (count: 17 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:17)

rs_ID	r²[population]
rs56110243	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs57581294	1.00[AFR][1000 genomes]
rs60235346	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73998308	1.00[AMR][1000 genomes]
rs73998310	1.00[AMR][1000 genomes]
rs73998311	1.00[AMR][1000 genomes]
rs73998321	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73998323	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73998324	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73998325	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73998326	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73998328	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73998330	1.00[AFR][1000 genomes]
rs73998344	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73998345	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73998346	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73998351	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]

No data

Chromatin state (count:126 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:234160000-234163800	Active TSS	GM12878-XiMat	blood
2	chr2:234161200-234163200	Enhancers	Spleen	Spleen
3	chr2:234161400-234164400	Weak transcription	Placenta	Placenta
4	chr2:234161400-234165200	Weak transcription	Ovary	ovary
5	chr2:234161400-234166800	Weak transcription	Esophagus	oesophagus
6	chr2:234161400-234170600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
7	chr2:234161400-234170600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
8	chr2:234161400-234170800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
9	chr2:234161600-234163200	Enhancers	Skeletal Muscle Female	skeletal muscle
10	chr2:234161600-234163200	Transcr. at gene 5' and 3'	Dnd41	blood
11	chr2:234161600-234163400	Transcr. at gene 5' and 3'	A549	lung
12	chr2:234161600-234165000	Enhancers	Colon Smooth Muscle	Colon
13	chr2:234161600-234167600	Weak transcription	Stomach Mucosa	stomach
14	chr2:234161800-234163200	Enhancers	Cortex derived primary cultured neurospheres	brain
15	chr2:234161800-234163200	Enhancers	Liver	Liver
16	chr2:234161800-234163200	Enhancers	Brain Angular Gyrus	brain
17	chr2:234161800-234163200	Enhancers	Skeletal Muscle Male	skeletal muscle
18	chr2:234161800-234164000	Enhancers	Primary T killer naive cells fromperipheralblood	blood
19	chr2:234161800-234164200	Genic enhancers	Primary T cells fromperipheralblood	blood
20	chr2:234161800-234164200	Enhancers	HUVEC	blood vessel
21	chr2:234161800-234164400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
22	chr2:234161800-234164600	Weak transcription	Primary hematopoietic stem cells	blood
23	chr2:234161800-234164600	Genic enhancers	Primary T regulatory cells fromperipheralblood	blood
24	chr2:234161800-234166000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
25	chr2:234161800-234166200	Weak transcription	H9 Cell Line	embryonic stem cell
26	chr2:234161800-234169000	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
27	chr2:234161800-234171800	Weak transcription	Fetal Kidney	kidney
28	chr2:234161800-234180600	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
29	chr2:234162000-234163200	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
30	chr2:234162000-234163200	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
31	chr2:234162000-234163200	Enhancers	Primary T cells effector/memory enriched fromperipheralblood	blood
32	chr2:234162000-234163200	Genic enhancers	Brain Germinal Matrix	brain
33	chr2:234162000-234163200	Enhancers	Rectal Mucosa Donor 31	rectum
34	chr2:234162000-234163800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
35	chr2:234162000-234164000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
36	chr2:234162000-234164000	Enhancers	Primary T killer memory cells from peripheral blood	blood
37	chr2:234162000-234164200	Genic enhancers	Fetal Brain Female	brain
38	chr2:234162000-234164400	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
39	chr2:234162000-234165000	Genic enhancers	Primary T helper cells fromperipheralblood	blood
40	chr2:234162000-234165800	Weak transcription	Colonic Mucosa	Colon
41	chr2:234162200-234163200	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
42	chr2:234162200-234163200	Strong transcription	Fetal Stomach	stomach
43	chr2:234162200-234163200	Enhancers	Pancreas	Pancrea
44	chr2:234162200-234163200	Genic enhancers	NHEK	skin
45	chr2:234162200-234163400	Strong transcription	Fetal Adrenal Gland	Adrenal Gland
46	chr2:234162200-234164000	Weak transcription	NHDF-Ad	bronchial
47	chr2:234162200-234165000	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
48	chr2:234162200-234165000	Weak transcription	Left Ventricle	heart
49	chr2:234162200-234167000	Weak transcription	Lung	lung
50	chr2:234162200-234205200	Strong transcription	HUES48 Cell Line	embryonic stem cell

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