Variant report

Variant	rs74008128
Chromosome Location	chr15:39695451-39695452
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr15:39694348..39696610-chr15:39874084..39875864,2	MCF-7	breast:
2	chr15:39693671..39697771-chr15:39871894..39873705,4	MCF-7	breast:
3	chr15:39693251..39695685-chr15:39695839..39697787,2	K562	blood:
4	chr15:39471065..39473001-chr15:39694678..39697568,2	MCF-7	breast:
5	chr15:39694167..39696674-chr15:39698967..39702842,3	K562	blood:
6	chr15:39693251..39695685-chr15:39695839..39698387,3	K562	blood:
7	chr15:39687930..39690603-chr15:39694421..39696812,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000137801	Chromatin interaction

Extended variants
information (count: 17 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:9)

rs_ID	r²[population]
rs11070198	0.97[AMR][1000 genomes];0.81[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs12148631	0.81[AMR][1000 genomes]
rs56839831	0.88[AMR][1000 genomes]
rs56869025	0.93[AMR][1000 genomes]
rs57248361	0.85[AMR][1000 genomes]
rs59068114	0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs61648928	0.81[AMR][1000 genomes]
rs73393497	0.88[AMR][1000 genomes]
rs74008125	0.81[AMR][1000 genomes];0.92[EUR][1000 genomes];0.87[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:8 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1049682	chr15:39657279-40027403	Enhancers Flanking Active TSS Weak transcription Strong transcription Flanking Bivalent TSS/Enh Active TSS Genic enhancers Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	23 gene(s)	inside rSNPs	diseases
2	nsv542361	chr15:39657279-40027403	Weak transcription Strong transcription Enhancers Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Active TSS Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	23 gene(s)	inside rSNPs	diseases
3	nsv1042824	chr15:39676039-39757222	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
4	nsv542362	chr15:39676039-39757222	Weak transcription Enhancers Active TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
5	nsv1047032	chr15:39679896-39706685	Weak transcription Enhancers Flanking Active TSS Active TSS Bivalent Enhancer	Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
6	esv3373125	chr15:39691567-40061262	Enhancers Flanking Active TSS Transcr. at gene 5' and 3' Weak transcription Bivalent/Poised TSS Strong transcription Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	20 gene(s)	inside rSNPs	diseases
7	nsv1052908	chr15:39692049-39750193	Active TSS Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
8	nsv1044082	chr15:39693241-39750193	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:21 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:39690400-39696600	Weak transcription	Monocytes-CD14+_RO01746	blood
2	chr15:39690600-39696000	Weak transcription	Primary monocytes fromperipheralblood	blood
3	chr15:39691400-39697000	Weak transcription	Left Ventricle	heart
4	chr15:39692600-39695600	Enhancers	Fetal Heart	heart
5	chr15:39693000-39695600	Weak transcription	NH-A	brain
6	chr15:39693000-39695800	Weak transcription	HepG2	liver
7	chr15:39693200-39695600	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
8	chr15:39694200-39696000	Weak transcription	Placenta Amnion	Placenta Amnion
9	chr15:39694400-39696000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
10	chr15:39695200-39695600	Weak transcription	Duodenum Smooth Muscle	Duodenum
11	chr15:39695200-39698000	Enhancers	Osteobl	bone
12	chr15:39695200-39699000	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
13	chr15:39695400-39695600	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
14	chr15:39695400-39697200	Enhancers	Fetal Lung	lung
15	chr15:39695400-39697600	Enhancers	Muscle Satellite Cultured Cells	--
16	chr15:39695400-39698000	Enhancers	Hela-S3	cervix
17	chr15:39695400-39698000	Enhancers	K562	blood
18	chr15:39695400-39698800	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
19	chr15:39695400-39699600	Enhancers	Breast Myoepithelial Primary Cells	Breast
20	chr15:39695400-39700400	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
21	chr15:39695400-39700400	Enhancers	NHDF-Ad	bronchial

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