Variant report

Variant	rs74008338
Chromosome Location	chr15:34122912-34122913
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 10 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:4)

rs_ID	r²[population]
rs12594219	1.00[EUR][1000 genomes]
rs2255311	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2288616	1.00[EUR][1000 genomes]
rs74008337	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1043046	chr15:33714908-34321330	Enhancers Flanking Active TSS Strong transcription Weak transcription ZNF genes & repeats Active TSS Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	8 gene(s)	inside rSNPs	diseases
2	nsv456789	chr15:34034421-34426618	Weak transcription Enhancers Active TSS Flanking Active TSS Strong transcription ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	29 gene(s)	inside rSNPs	diseases
3	nsv568920	chr15:34034421-34426618	Enhancers Flanking Active TSS Strong transcription Weak transcription Active TSS Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	29 gene(s)	inside rSNPs	diseases
4	nsv471235	chr15:34035529-34421951	Strong transcription Weak transcription Enhancers Bivalent/Poised TSS Active TSS Flanking Active TSS Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	29 gene(s)	inside rSNPs	diseases
5	nsv568921	chr15:34046635-34247622	Enhancers Weak transcription Strong transcription Flanking Active TSS ZNF genes & repeats Genic enhancers Active TSS Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	4 gene(s)	inside rSNPs	diseases
6	nsv1044844	chr15:34065524-34296829	Enhancers Weak transcription Strong transcription Genic enhancers ZNF genes & repeats Flanking Active TSS Active TSS Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:21 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:34090600-34151800	Weak transcription	Brain Cingulate Gyrus	brain
2	chr15:34091800-34151000	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
3	chr15:34097800-34123800	Weak transcription	Brain Inferior Temporal Lobe	brain
4	chr15:34105800-34126600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
5	chr15:34107600-34129000	Weak transcription	Fetal Muscle Trunk	muscle
6	chr15:34114400-34149400	Weak transcription	Fetal Stomach	stomach
7	chr15:34117600-34130000	Weak transcription	Brain Angular Gyrus	brain
8	chr15:34119000-34123600	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
9	chr15:34119400-34128800	Weak transcription	Fetal Muscle Leg	muscle
10	chr15:34119600-34129000	Weak transcription	Aorta	Aorta
11	chr15:34119600-34129000	Weak transcription	Skeletal Muscle Female	skeletal muscle
12	chr15:34119600-34137200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
13	chr15:34120800-34124200	Weak transcription	Brain Substantia Nigra	brain
14	chr15:34121200-34129000	Weak transcription	Brain Anterior Caudate	brain
15	chr15:34121200-34129400	Weak transcription	Skeletal Muscle Male	skeletal muscle
16	chr15:34121400-34158400	Weak transcription	Duodenum Smooth Muscle	Duodenum
17	chr15:34121600-34128800	Weak transcription	Stomach Smooth Muscle	stomach
18	chr15:34122000-34124600	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
19	chr15:34122400-34123200	Strong transcription	Breast Myoepithelial Primary Cells	Breast
20	chr15:34122600-34123200	Enhancers	Hela-S3	cervix
21	chr15:34122800-34123600	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links