Variant report

Variant	rs74009096
Chromosome Location	chr15:42775299-42775300
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr15:42766882..42770681-chr15:42773569..42778929,5	K562	blood:
2	chr15:42773178..42778058-chr15:42778885..42785896,9	K562	blood:
3	chr15:42775197..42777120-chr15:42783481..42785108,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000103994	Chromatin interaction
ENSG00000092531	Chromatin interaction

Extended variants
information (count: 8 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:2)

rs_ID	r²[population]
rs28364413	1.00[AMR][1000 genomes]
rs58372549	1.00[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv931223	chr15:41989960-42781757	Enhancers Weak transcription Strong transcription Flanking Active TSS Genic enhancers Bivalent Enhancer Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	81 gene(s)	inside rSNPs	diseases
2	nsv1049445	chr15:42239738-42830484	Enhancers Strong transcription Weak transcription Flanking Active TSS Transcr. at gene 5' and 3' Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	73 gene(s)	inside rSNPs	diseases
3	nsv542366	chr15:42239738-42830484	Weak transcription Active TSS Enhancers Strong transcription Bivalent Enhancer Flanking Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	73 gene(s)	inside rSNPs	diseases
4	nsv832987	chr15:42627447-42792348	Active TSS Strong transcription Enhancers Flanking Active TSS Weak transcription Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	28 gene(s)	inside rSNPs	diseases
5	esv3334708	chr15:42664344-42827738	Strong transcription Active TSS Weak transcription Enhancers Flanking Active TSS Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	29 gene(s)	inside rSNPs	diseases
6	nsv528725	chr15:42755555-43104406	Weak transcription Active TSS Strong transcription Enhancers Transcr. at gene 5' and 3' Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	50 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:89 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:42744200-42781800	Weak transcription	Primary T killer memory cells from peripheral blood	blood
2	chr15:42744200-42782400	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
3	chr15:42750000-42782600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
4	chr15:42750200-42782400	Weak transcription	Aorta	Aorta
5	chr15:42750800-42782400	Weak transcription	Ovary	ovary
6	chr15:42751000-42782400	Weak transcription	Fetal Lung	lung
7	chr15:42754600-42782400	Weak transcription	HSMMtube	muscle
8	chr15:42756000-42777600	Weak transcription	Lung	lung
9	chr15:42756000-42782600	Weak transcription	Esophagus	oesophagus
10	chr15:42756200-42782400	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
11	chr15:42757800-42782600	Weak transcription	Gastric	stomach
12	chr15:42758000-42781600	Weak transcription	Duodenum Smooth Muscle	Duodenum
13	chr15:42758000-42782400	Weak transcription	NHLF	lung
14	chr15:42758200-42776200	Weak transcription	HepG2	liver
15	chr15:42758200-42781600	Weak transcription	Brain Hippocampus Middle	brain
16	chr15:42758200-42781600	Weak transcription	Stomach Smooth Muscle	stomach
17	chr15:42758200-42781800	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
18	chr15:42758400-42775400	Weak transcription	Brain Inferior Temporal Lobe	brain
19	chr15:42758400-42775400	Weak transcription	Spleen	Spleen
20	chr15:42758400-42776800	Weak transcription	Sigmoid Colon	Sigmoid Colon
21	chr15:42758400-42780000	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
22	chr15:42758400-42780400	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
23	chr15:42758400-42780600	Weak transcription	NHEK	skin
24	chr15:42758400-42781800	Weak transcription	Primary T helper naive cells from peripheral blood	blood
25	chr15:42758400-42781800	Weak transcription	Brain Anterior Caudate	brain
26	chr15:42758400-42782200	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
27	chr15:42758400-42782200	Weak transcription	Fetal Brain Female	brain
28	chr15:42758400-42782200	Weak transcription	Thymus	Thymus
29	chr15:42759800-42782200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
30	chr15:42761400-42782000	Weak transcription	Fetal Stomach	stomach
31	chr15:42761800-42782400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
32	chr15:42762400-42775400	Weak transcription	Placenta	Placenta
33	chr15:42763400-42777200	Weak transcription	Primary B cells from peripheral blood	blood
34	chr15:42763400-42777200	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
35	chr15:42763400-42777400	Weak transcription	Primary T helper cells fromperipheralblood	blood
36	chr15:42763400-42782400	Weak transcription	Duodenum Mucosa	Duodenum
37	chr15:42763600-42780000	Weak transcription	Hela-S3	cervix
38	chr15:42763600-42780800	Weak transcription	Muscle Satellite Cultured Cells	--
39	chr15:42763600-42781600	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
40	chr15:42763600-42782200	Weak transcription	HMEC	breast
41	chr15:42763800-42782400	Weak transcription	iPS-20b Cell Line	embryonic stem cell
42	chr15:42763800-42782400	Weak transcription	Fetal Intestine Large	intestine
43	chr15:42763800-42782400	Weak transcription	Rectal Smooth Muscle	rectum
44	chr15:42764000-42777600	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
45	chr15:42764200-42782400	Weak transcription	HUES64 Cell Line	embryonic stem cell
46	chr15:42764600-42777000	Weak transcription	Liver	Liver
47	chr15:42764600-42782200	Weak transcription	HUVEC	blood vessel
48	chr15:42764800-42775400	Weak transcription	Rectal Mucosa Donor 29	rectum
49	chr15:42764800-42777400	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
50	chr15:42764800-42782000	Weak transcription	Rectal Mucosa Donor 31	rectum

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