Variant report

Variant	rs74009239
Chromosome Location	chr15:43465893-43465894
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr15:43463717..43466619-chr15:43475736..43477450,3	K562	blood:
2	chr15:43460200..43462280-chr15:43465251..43468225,2	K562	blood:
3	chr15:43462795..43466619-chr15:43475736..43479211,5	K562	blood:

Variant related genes	Relation type
ENSG00000166946	Chromatin interaction
ENSG00000137842	Chromatin interaction
ENSG00000261687	Chromatin interaction

Extended variants
information (count: 9 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:1)

rs_ID	r²[population]
rs56071832	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:8 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv525461	chr15:43062548-43482127	Enhancers Flanking Active TSS Weak transcription Strong transcription ZNF genes & repeats Flanking Bivalent TSS/Enh Genic enhancers Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	32 gene(s)	inside rSNPs	diseases
2	nsv1044522	chr15:43115348-43658417	Strong transcription Weak transcription Flanking Active TSS Transcr. at gene 5' and 3' Enhancers Active TSS Genic enhancers Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	47 gene(s)	inside rSNPs	diseases
3	nsv569241	chr15:43201109-43522922	Active TSS Weak transcription ZNF genes & repeats Strong transcription Enhancers Flanking Active TSS Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	32 gene(s)	inside rSNPs	diseases
4	nsv904136	chr15:43257475-43482127	Weak transcription Enhancers Strong transcription Active TSS Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	29 gene(s)	inside rSNPs	diseases
5	nsv904139	chr15:43268970-43482127	Weak transcription Strong transcription Active TSS Flanking Active TSS Genic enhancers Enhancers Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	28 gene(s)	inside rSNPs	diseases
6	nsv1044508	chr15:43270637-43658417	Weak transcription Genic enhancers Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Active TSS Active TSS Enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	43 gene(s)	inside rSNPs	diseases
7	nsv904144	chr15:43276345-43482127	Bivalent/Poised TSS Strong transcription Weak transcription Enhancers Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	28 gene(s)	inside rSNPs	diseases
8	esv1802035	chr15:43370916-43487742	Weak transcription Active TSS Strong transcription Enhancers Flanking Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	28 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:107 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:43427600-43475000	Weak transcription	Stomach Mucosa	stomach
2	chr15:43433400-43467600	Weak transcription	HSMM	muscle
3	chr15:43437000-43467200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
4	chr15:43440800-43476800	Weak transcription	Fetal Brain Male	brain
5	chr15:43441800-43477200	Weak transcription	HSMMtube	muscle
6	chr15:43442000-43476800	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
7	chr15:43443000-43467600	Weak transcription	Aorta	Aorta
8	chr15:43444600-43477200	Weak transcription	Primary T killer memory cells from peripheral blood	blood
9	chr15:43444800-43471600	Weak transcription	Primary T cells from cord blood	blood
10	chr15:43444800-43477000	Weak transcription	Primary T helper naive cells from peripheral blood	blood
11	chr15:43444800-43477000	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
12	chr15:43445000-43471600	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
13	chr15:43446000-43476600	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
14	chr15:43447600-43477600	Weak transcription	Small Intestine	intestine
15	chr15:43448000-43477400	Weak transcription	Ovary	ovary
16	chr15:43448200-43477200	Weak transcription	Brain Substantia Nigra	brain
17	chr15:43449400-43467600	Weak transcription	HepG2	liver
18	chr15:43449600-43477000	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
19	chr15:43452800-43466200	Weak transcription	Fetal Muscle Trunk	muscle
20	chr15:43460400-43467800	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
21	chr15:43460400-43468000	Strong transcription	Monocytes-CD14+_RO01746	blood
22	chr15:43460400-43468200	Strong transcription	Primary neutrophils fromperipheralblood	blood
23	chr15:43460600-43467600	Strong transcription	Primary monocytes fromperipheralblood	blood
24	chr15:43460600-43468000	Strong transcription	Primary B cells from peripheral blood	blood
25	chr15:43460600-43468400	Strong transcription	Primary T helper cells fromperipheralblood	blood
26	chr15:43461000-43466200	Strong transcription	GM12878-XiMat	blood
27	chr15:43461000-43475400	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
28	chr15:43461200-43466200	Weak transcription	Thymus	Thymus
29	chr15:43461200-43466800	Weak transcription	Left Ventricle	heart
30	chr15:43461200-43467000	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
31	chr15:43461200-43467600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
32	chr15:43461200-43467600	Weak transcription	Lung	lung
33	chr15:43461200-43467600	Weak transcription	Pancreas	Pancrea
34	chr15:43461200-43467800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
35	chr15:43461200-43476600	Weak transcription	Fetal Thymus	thymus
36	chr15:43461200-43476800	Weak transcription	Gastric	stomach
37	chr15:43461200-43477000	Weak transcription	A549	lung
38	chr15:43461400-43466200	Weak transcription	Brain Anterior Caudate	brain
39	chr15:43461400-43466600	Weak transcription	Placenta	Placenta
40	chr15:43461400-43467400	Weak transcription	iPS-15b Cell Line	embryonic stem cell
41	chr15:43461400-43467400	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
42	chr15:43461400-43467400	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
43	chr15:43461400-43467600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
44	chr15:43461400-43467600	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
45	chr15:43461400-43467600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
46	chr15:43461400-43467600	Weak transcription	Esophagus	oesophagus
47	chr15:43461400-43476800	Weak transcription	Hela-S3	cervix
48	chr15:43461400-43477200	Weak transcription	Right Ventricle	heart
49	chr15:43461600-43477000	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
50	chr15:43461600-43477000	Weak transcription	Spleen	Spleen

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