Variant report

Variant	rs74010682
Chromosome Location	chr15:31804526-31804527
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 15 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:6)

rs_ID	r²[population]
rs59443429	1.00[AFR][1000 genomes]
rs61118115	1.00[AFR][1000 genomes]
rs61361220	0.89[AFR][1000 genomes]
rs74010669	0.89[AFR][1000 genomes]
rs74010672	0.89[AFR][1000 genomes]
rs74010681	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:9 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1054147	chr15:31014507-31972706	Weak transcription Enhancers Flanking Active TSS Active TSS Strong transcription Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	87 gene(s)	inside rSNPs	diseases
2	nsv542306	chr15:31014507-31972706	Weak transcription Bivalent Enhancer Enhancers Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Genic enhancers Active TSS Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	87 gene(s)	inside rSNPs	diseases
3	nsv1051589	chr15:31728004-31972706	Active TSS Weak transcription Enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS Strong transcription Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
4	nsv542320	chr15:31728004-31972706	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Flanking Active TSS Strong transcription Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
5	nsv469633	chr15:31731003-31904613	Flanking Bivalent TSS/Enh Enhancers Weak transcription Bivalent/Poised TSS Active TSS Flanking Active TSS Bivalent Enhancer Strong transcription ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
6	nsv482330	chr15:31731003-31904613	Weak transcription Enhancers Active TSS Strong transcription Bivalent Enhancer Flanking Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
7	nsv903845	chr15:31751664-31939001	Weak transcription Active TSS Enhancers ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
8	esv3424696	chr15:31801985-31805258	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS	n/a	n/a	inside rSNPs	diseases
9	esv3408511	chr15:31802185-31805233	Enhancers Active TSS Weak transcription Flanking Active TSS Bivalent Enhancer	n/a	n/a	inside rSNPs	diseases

No data

Chromatin state (count:31 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:31782400-31821000	Weak transcription	Stomach Smooth Muscle	stomach
2	chr15:31787200-31810800	Weak transcription	Pancreas	Pancrea
3	chr15:31797000-31814200	Weak transcription	Brain Cingulate Gyrus	brain
4	chr15:31802600-31814200	Weak transcription	Brain Hippocampus Middle	brain
5	chr15:31802600-31814400	Weak transcription	Brain Inferior Temporal Lobe	brain
6	chr15:31802600-31814400	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
7	chr15:31802600-31817000	Weak transcription	Brain Angular Gyrus	brain
8	chr15:31802600-31817000	Weak transcription	Brain Substantia Nigra	brain
9	chr15:31802600-31817200	Weak transcription	Brain Anterior Caudate	brain
10	chr15:31802600-31825200	Weak transcription	Fetal Brain Female	brain
11	chr15:31804000-31804600	Enhancers	Primary B cells from peripheral blood	blood
12	chr15:31804000-31804800	Enhancers	Primary T helper naive cells fromperipheralblood	blood
13	chr15:31804000-31805000	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
14	chr15:31804000-31805000	Enhancers	Primary T helper naive cells from peripheral blood	blood
15	chr15:31804000-31805000	Enhancers	Primary T regulatory cells fromperipheralblood	blood
16	chr15:31804000-31805000	Enhancers	Primary T killer naive cells fromperipheralblood	blood
17	chr15:31804000-31805400	Enhancers	Primary T helper cells PMA-I stimulated	--
18	chr15:31804000-31805400	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
19	chr15:31804000-31805600	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
20	chr15:31804000-31805800	Enhancers	Primary T cells from cord blood	blood
21	chr15:31804000-31805800	Enhancers	Primary T cells fromperipheralblood	blood
22	chr15:31804000-31805800	Enhancers	Primary T helper cells fromperipheralblood	blood
23	chr15:31804200-31804600	Flanking Active TSS	Primary T helper 17 cells PMA-I stimulated	--
24	chr15:31804200-31804600	Enhancers	Psoas Muscle	Psoas
25	chr15:31804200-31804600	Flanking Active TSS	GM12878-XiMat	blood
26	chr15:31804200-31805000	Enhancers	Primary T killer memory cells from peripheral blood	blood
27	chr15:31804200-31805000	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
28	chr15:31804200-31805200	Enhancers	Primary T cells effector/memory enriched fromperipheralblood	blood
29	chr15:31804400-31804600	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
30	chr15:31804400-31804600	Enhancers	Thymus	Thymus
31	chr15:31804400-31804600	Enhancers	NHEK	skin

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