Variant report

Variant	rs74011141
Chromosome Location	chr15:32957565-32957566
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr15:32951565..32953910-chr15:32954675..32957647,2	MCF-7	breast:

Extended variants
information (count: 15 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:6)

rs_ID	r²[population]
rs12906786	1.00[ASN][1000 genomes]
rs12916120	1.00[ASN][1000 genomes]
rs13329660	1.00[ASN][1000 genomes]
rs55752067	1.00[ASN][1000 genomes]
rs62001277	1.00[ASN][1000 genomes]
rs7178265	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:9 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv431374	chr15:32008985-32976055	Weak transcription Active TSS Enhancers Flanking Active TSS Bivalent/Poised TSS Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	47 gene(s)	inside rSNPs	diseases
2	nsv431378	chr15:32009008-32961905	Flanking Bivalent TSS/Enh Strong transcription Enhancers Flanking Active TSS Weak transcription Active TSS Bivalent Enhancer Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	46 gene(s)	inside rSNPs	diseases
3	nsv517740	chr15:32020066-32958711	Weak transcription Enhancers Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Strong transcription Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	45 gene(s)	inside rSNPs	diseases
4	esv1822680	chr15:32403895-32962148	Weak transcription Active TSS Strong transcription Enhancers ZNF genes & repeats Flanking Active TSS Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	40 gene(s)	inside rSNPs	diseases
5	esv2422296	chr15:32798938-33221215	Weak transcription Enhancers Strong transcription Genic enhancers Active TSS Bivalent/Poised TSS Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	23 gene(s)	inside rSNPs	diseases
6	nsv469587	chr15:32821940-32986579	Strong transcription Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	19 gene(s)	inside rSNPs	diseases
7	nsv482780	chr15:32821940-32986579	Weak transcription Enhancers Active TSS Flanking Active TSS Strong transcription Bivalent Enhancer Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	19 gene(s)	inside rSNPs	diseases
8	nsv456785	chr15:32926076-33352989	Genic enhancers Active TSS Weak transcription Bivalent Enhancer Enhancers Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases
9	nsv568913	chr15:32926076-33352989	Weak transcription Bivalent Enhancer Enhancers Flanking Active TSS Active TSS Genic enhancers Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:46 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:32934400-32962200	Weak transcription	Cortex derived primary cultured neurospheres	brain
2	chr15:32935200-32960800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
3	chr15:32944600-32962200	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
4	chr15:32944800-32960200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
5	chr15:32944800-32960600	Weak transcription	H9 Cell Line	embryonic stem cell
6	chr15:32947000-32960400	Weak transcription	HUES48 Cell Line	embryonic stem cell
7	chr15:32947000-32960600	Weak transcription	HUES64 Cell Line	embryonic stem cell
8	chr15:32947800-32958400	Weak transcription	Fetal Thymus	thymus
9	chr15:32949200-32961200	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
10	chr15:32949800-32960200	Weak transcription	GM12878-XiMat	blood
11	chr15:32951000-32967400	Weak transcription	Primary monocytes fromperipheralblood	blood
12	chr15:32952200-32961200	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
13	chr15:32952200-32972800	Weak transcription	Fetal Brain Female	brain
14	chr15:32952600-32961200	Weak transcription	Osteobl	bone
15	chr15:32952600-32962000	Weak transcription	A549	lung
16	chr15:32952800-32961400	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
17	chr15:32952800-32962200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
18	chr15:32952800-32962400	Weak transcription	Esophagus	oesophagus
19	chr15:32952800-32967000	Weak transcription	Primary neutrophils fromperipheralblood	blood
20	chr15:32953000-32959600	Weak transcription	Thymus	Thymus
21	chr15:32953000-32960600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
22	chr15:32953000-32961000	Weak transcription	Breast Myoepithelial Primary Cells	Breast
23	chr15:32953000-32962200	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
24	chr15:32953000-32962200	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
25	chr15:32953000-32962200	Weak transcription	HMEC	breast
26	chr15:32953000-32962200	Weak transcription	NHEK	skin
27	chr15:32953000-32967200	Weak transcription	Monocytes-CD14+_RO01746	blood
28	chr15:32955200-32960000	Weak transcription	HUVEC	blood vessel
29	chr15:32955200-32961000	Weak transcription	NH-A	brain
30	chr15:32955400-32959200	Enhancers	NHDF-Ad	bronchial
31	chr15:32955800-32958600	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
32	chr15:32956000-32958000	Enhancers	NHLF	lung
33	chr15:32956200-32958600	Weak transcription	Brain Substantia Nigra	brain
34	chr15:32956200-32960800	Weak transcription	Brain Angular Gyrus	brain
35	chr15:32956200-32973800	Weak transcription	HSMM	muscle
36	chr15:32956400-32957800	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
37	chr15:32956400-32960800	Weak transcription	Brain Inferior Temporal Lobe	brain
38	chr15:32956400-32961200	Weak transcription	Brain Hippocampus Middle	brain
39	chr15:32956400-32962200	Weak transcription	Brain Anterior Caudate	brain
40	chr15:32956600-32961600	Weak transcription	Stomach Smooth Muscle	stomach
41	chr15:32957000-32968400	Weak transcription	Brain Germinal Matrix	brain
42	chr15:32957200-32957600	Enhancers	Pancreatic Islets	Pancreatic Islet
43	chr15:32957200-32959200	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
44	chr15:32957200-32960400	Weak transcription	Brain Cingulate Gyrus	brain
45	chr15:32957200-32960800	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
46	chr15:32957400-32957800	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin

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