Variant report

Variant	rs74011729
Chromosome Location	chr15:42410854-42410855
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr15:42359873..42362452-chr15:42410836..42413040,2	K562	blood:

Extended variants
information (count: 44 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:35)

rs_ID	r²[population]
rs1668549	0.90[ASN][1000 genomes]
rs2122676	1.00[ASN][1000 genomes]
rs2167294	1.00[ASN][1000 genomes]
rs2412669	1.00[ASN][1000 genomes]
rs2677756	0.91[ASN][1000 genomes]
rs28414830	1.00[ASN][1000 genomes]
rs28499088	1.00[ASN][1000 genomes]
rs28665345	1.00[ASN][1000 genomes]
rs28718476	1.00[ASN][1000 genomes]
rs4924626	0.81[ASN][1000 genomes]
rs55926717	0.98[ASN][1000 genomes]
rs55976655	0.83[ASN][1000 genomes]
rs56040775	0.81[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs58555641	0.88[ASN][1000 genomes]
rs58905750	1.00[ASN][1000 genomes]
rs600957	0.88[ASN][1000 genomes]
rs60179947	0.91[ASN][1000 genomes]
rs60279267	1.00[ASN][1000 genomes]
rs60513852	1.00[ASN][1000 genomes]
rs60759517	1.00[ASN][1000 genomes]
rs60807341	0.99[ASN][1000 genomes]
rs61190589	1.00[ASN][1000 genomes]
rs6650522	0.91[ASN][1000 genomes]
rs675996	0.88[ASN][1000 genomes]
rs72489213	1.00[ASN][1000 genomes]
rs74009005	0.82[ASN][1000 genomes]
rs74011727	1.00[ASN][1000 genomes]
rs74011732	0.95[ASN][1000 genomes]
rs776716	0.91[ASN][1000 genomes]
rs8023346	1.00[ASN][1000 genomes]
rs8030796	1.00[ASN][1000 genomes]
rs8032387	1.00[ASN][1000 genomes]
rs8040255	0.80[ASN][1000 genomes]
rs8042280	1.00[ASN][1000 genomes]
rs9672757	0.96[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:9 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv931223	chr15:41989960-42781757	Enhancers Weak transcription Strong transcription Flanking Active TSS Genic enhancers Bivalent Enhancer Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	81 gene(s)	inside rSNPs	diseases
2	nsv1035998	chr15:42098896-42434254	Weak transcription Enhancers Strong transcription Active TSS Flanking Active TSS Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	38 gene(s)	inside rSNPs	diseases
3	nsv529687	chr15:42157320-42621682	Weak transcription Strong transcription Enhancers Active TSS Flanking Active TSS Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	59 gene(s)	inside rSNPs	diseases
4	nsv1049445	chr15:42239738-42830484	Enhancers Strong transcription Weak transcription Flanking Active TSS Transcr. at gene 5' and 3' Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	73 gene(s)	inside rSNPs	diseases
5	nsv542366	chr15:42239738-42830484	Weak transcription Active TSS Enhancers Strong transcription Bivalent Enhancer Flanking Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	73 gene(s)	inside rSNPs	diseases
6	nsv471683	chr15:42334375-42502982	Enhancers Bivalent Enhancer Genic enhancers Strong transcription Active TSS Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	12 gene(s)	inside rSNPs	diseases
7	nsv832985	chr15:42371482-42564966	Weak transcription Strong transcription Enhancers Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	12 gene(s)	inside rSNPs	diseases
8	nsv457121	chr15:42396282-42418085	Enhancers Flanking Bivalent TSS/Enh Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer	Chromatin interactive region	n/a	inside rSNPs	diseases
9	nsv569236	chr15:42396282-42418085	Active TSS Flanking Active TSS Enhancers Weak transcription Bivalent Enhancer Flanking Bivalent TSS/Enh	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:22 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:42405000-42411400	Weak transcription	Primary hematopoietic stem cells short term culture	blood
2	chr15:42408200-42411200	Weak transcription	Primary neutrophils fromperipheralblood	blood
3	chr15:42410600-42411000	Enhancers	HUES48 Cell Line	embryonic stem cell
4	chr15:42410600-42411000	Enhancers	HUES64 Cell Line	embryonic stem cell
5	chr15:42410600-42411000	Enhancers	Rectal Mucosa Donor 31	rectum
6	chr15:42410600-42411800	Enhancers	H9 Cell Line	embryonic stem cell
7	chr15:42410600-42411800	Enhancers	iPS-15b Cell Line	embryonic stem cell
8	chr15:42410800-42411000	Enhancers	ES-I3 Cell Line	embryonic stem cell
9	chr15:42410800-42411000	Enhancers	iPS-20b Cell Line	embryonic stem cell
10	chr15:42410800-42411000	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
11	chr15:42410800-42411000	Enhancers	Duodenum Mucosa	Duodenum
12	chr15:42410800-42411000	Enhancers	Fetal Intestine Large	intestine
13	chr15:42410800-42411000	Enhancers	Rectal Mucosa Donor 29	rectum
14	chr15:42410800-42411000	Enhancers	Dnd41	blood
15	chr15:42410800-42411200	Enhancers	Fetal Heart	heart
16	chr15:42410800-42411200	Enhancers	Fetal Thymus	thymus
17	chr15:42410800-42411200	Enhancers	Monocytes-CD14+_RO01746	blood
18	chr15:42410800-42411400	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
19	chr15:42410800-42411600	Enhancers	Duodenum Smooth Muscle	Duodenum
20	chr15:42410800-42412000	Enhancers	Stomach Mucosa	stomach
21	chr15:42410800-42412000	Bivalent Enhancer	HepG2	liver
22	chr15:42410800-42416000	Enhancers	Primary monocytes fromperipheralblood	blood

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