Variant report

Variant	rs74011928
Chromosome Location	chr15:40875233-40875234
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr15:40866258..40868658-chr15:40873477..40876647,3	MCF-7	breast:

Extended variants
information (count: 11 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:7)

rs_ID	r²[population]
rs55675456	1.00[AFR][1000 genomes]
rs57070503	1.00[AFR][1000 genomes]
rs58990578	1.00[AFR][1000 genomes]
rs61028075	1.00[AFR][1000 genomes]
rs74011927	1.00[AFR][1000 genomes]
rs8030211	1.00[AFR][1000 genomes]
rs8031130	1.00[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv34145	chr15:40549617-40889824	Weak transcription Strong transcription Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS Enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	66 gene(s)	inside rSNPs	diseases
2	nsv832984	chr15:40794391-40998535	Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS Strong transcription Enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Genic enhancers Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	46 gene(s)	inside rSNPs	diseases
3	esv2758378	chr15:40832545-40995111	Active TSS Flanking Active TSS Strong transcription Enhancers Genic enhancers Weak transcription Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	44 gene(s)	inside rSNPs	diseases
4	esv2760026	chr15:40832545-40995111	Weak transcription Flanking Active TSS Strong transcription Active TSS Enhancers Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	44 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:73 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:40866400-40876600	Weak transcription	HSMMtube	muscle
2	chr15:40866400-40878200	Weak transcription	Brain Angular Gyrus	brain
3	chr15:40866600-40881800	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
4	chr15:40866600-40881800	Weak transcription	Cortex derived primary cultured neurospheres	brain
5	chr15:40866600-40881800	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
6	chr15:40867200-40876400	Weak transcription	Brain Cingulate Gyrus	brain
7	chr15:40867400-40875400	Weak transcription	NHEK	skin
8	chr15:40867400-40876400	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
9	chr15:40867400-40883600	Weak transcription	HUES48 Cell Line	embryonic stem cell
10	chr15:40867800-40876400	Weak transcription	Brain Hippocampus Middle	brain
11	chr15:40874200-40876400	Active TSS	HepG2	liver
12	chr15:40874200-40876600	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
13	chr15:40874800-40875400	Active TSS	iPS-15b Cell Line	embryonic stem cell
14	chr15:40874800-40875400	Active TSS	Brain Anterior Caudate	brain
15	chr15:40874800-40875400	Active TSS	Pancreas	Pancrea
16	chr15:40874800-40875600	Active TSS	ES-I3 Cell Line	embryonic stem cell
17	chr15:40874800-40875600	Active TSS	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
18	chr15:40874800-40875600	Active TSS	Colonic Mucosa	Colon
19	chr15:40874800-40875600	Active TSS	Duodenum Smooth Muscle	Duodenum
20	chr15:40874800-40875600	Active TSS	Fetal Intestine Small	intestine
21	chr15:40874800-40875600	Active TSS	Rectal Mucosa Donor 29	rectum
22	chr15:40874800-40875600	Active TSS	Osteobl	bone
23	chr15:40874800-40875800	Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
24	chr15:40874800-40875800	Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
25	chr15:40874800-40875800	Active TSS	Duodenum Mucosa	Duodenum
26	chr15:40874800-40875800	Active TSS	Skeletal Muscle Female	skeletal muscle
27	chr15:40875000-40875400	Enhancers	Primary B cells from cord blood	blood
28	chr15:40875000-40875400	Active TSS	Primary T helper cells PMA-I stimulated	--
29	chr15:40875000-40875400	Active TSS	Colon Smooth Muscle	Colon
30	chr15:40875000-40875400	Active TSS	Fetal Lung	lung
31	chr15:40875000-40875400	Active TSS	Rectal Mucosa Donor 31	rectum
32	chr15:40875000-40875400	Enhancers	Stomach Mucosa	stomach
33	chr15:40875000-40875400	Enhancers	Dnd41	blood
34	chr15:40875000-40875600	Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Female	--
35	chr15:40875000-40875600	Active TSS	Liver	Liver
36	chr15:40875000-40875600	Active TSS	Brain Inferior Temporal Lobe	brain
37	chr15:40875000-40875600	Active TSS	Brain Substantia Nigra	brain
38	chr15:40875000-40875600	Active TSS	Pancreatic Islets	Pancreatic Islet
39	chr15:40875000-40875600	Active TSS	Lung	lung
40	chr15:40875000-40875600	Active TSS	Rectal Smooth Muscle	rectum
41	chr15:40875000-40875600	Active TSS	Right Atrium	heart
42	chr15:40875000-40875600	Active TSS	Skeletal Muscle Male	skeletal muscle
43	chr15:40875000-40875800	Active TSS	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
44	chr15:40875000-40875800	Active TSS	Ovary	ovary
45	chr15:40875000-40875800	Active TSS	Stomach Smooth Muscle	stomach
46	chr15:40875000-40876400	Active TSS	Hela-S3	cervix
47	chr15:40875200-40875400	Enhancers	iPS-18 Cell Line	embryonic stem cell
48	chr15:40875200-40875400	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
49	chr15:40875200-40875400	Flanking Active TSS	Foreskin Fibroblast Primary Cells skin01	Skin
50	chr15:40875200-40875400	Enhancers	Brain Dorsolateral Prefrontal Cortex	brain

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