Variant report

Variant	rs74013135
Chromosome Location	chr15:51386232-51386233
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:9)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:9 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr15:51374735..51377659-chr15:51385754..51389535,3	MCF-7	breast:
2	chr15:51385109..51388329-chr15:51394430..51396679,3	MCF-7	breast:
3	chr15:51377919..51380652-chr15:51384491..51387589,4	MCF-7	breast:
4	chr15:51384467..51387143-chr15:51389219..51391911,2	MCF-7	breast:
5	chr15:51378412..51381231-chr15:51384071..51387413,3	MCF-7	breast:
6	chr15:51329958..51333003-chr15:51384455..51387756,5	MCF-7	breast:
7	chr15:51385170..51388153-chr15:51390424..51392777,2	K562	blood:
8	chr15:51199017..51202160-chr15:51384905..51388253,3	MCF-7	breast:
9	chr15:51385731..51387801-chr15:51406317..51408317,2	MCF-7	breast:

No data

Variant related genes	Relation type
ENSG00000081014	Chromatin interaction

Extended variants
information (count: 22 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs57305511	0.82[AFR][1000 genomes]
rs57322405	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs58652891	1.00[AMR][1000 genomes]
rs58853092	1.00[AMR][1000 genomes]
rs59853681	1.00[AMR][1000 genomes]
rs60209010	1.00[AMR][1000 genomes]
rs74013132	0.82[AFR][1000 genomes]
rs74013134	0.85[AFR][1000 genomes]
rs74013136	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74013140	1.00[AMR][1000 genomes]
rs74013149	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:11 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1047443	chr15:50744781-51647023	Strong transcription Active TSS Weak transcription Genic enhancers Enhancers Flanking Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	82 gene(s)	inside rSNPs	diseases
2	nsv569399	chr15:50874964-51562198	Flanking Active TSS Transcr. at gene 5' and 3' Weak transcription Strong transcription Enhancers Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	70 gene(s)	inside rSNPs	diseases
3	nsv569400	chr15:50874964-51767265	ZNF genes & repeats Weak transcription Strong transcription Active TSS Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer Enhancers Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	80 gene(s)	inside rSNPs	diseases
4	nsv904214	chr15:51204364-51535192	Strong transcription Bivalent Enhancer Enhancers Flanking Bivalent TSS/Enh Weak transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	14 gene(s)	inside rSNPs	diseases
5	nsv1049644	chr15:51265447-51560445	Strong transcription Enhancers Bivalent Enhancer Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	11 gene(s)	inside rSNPs	diseases
6	esv34532	chr15:51276128-51752856	Flanking Active TSS Weak transcription Strong transcription Enhancers Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	21 gene(s)	inside rSNPs	diseases
7	esv2758382	chr15:51282257-51830339	Enhancers Bivalent/Poised TSS Weak transcription Bivalent Enhancer Strong transcription Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	22 gene(s)	inside rSNPs	diseases
8	esv2760031	chr15:51282257-51830339	Weak transcription Enhancers Strong transcription Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Flanking Active TSS Active TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	22 gene(s)	inside rSNPs	diseases
9	nsv428634	chr15:51299632-51446666	Weak transcription Enhancers Flanking Active TSS Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Active TSS Bivalent Enhancer ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
10	nsv471243	chr15:51345485-52018096	Weak transcription Enhancers Active TSS Flanking Active TSS Genic enhancers Strong transcription Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	39 gene(s)	inside rSNPs	diseases
11	esv2757600	chr15:51352249-51783981	Weak transcription Bivalent Enhancer Enhancers Strong transcription Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	21 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:113 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:51384600-51386400	Bivalent Enhancer	H9 Derived Neuron Cultured Cells	ES cell derived
2	chr15:51384800-51386400	Flanking Bivalent TSS/Enh	Foreskin Fibroblast Primary Cells skin01	Skin
3	chr15:51385000-51387600	Active TSS	Rectal Smooth Muscle	rectum
4	chr15:51385000-51388000	Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
5	chr15:51385000-51388000	Active TSS	Aorta	Aorta
6	chr15:51385200-51387600	Active TSS	Brain Cingulate Gyrus	brain
7	chr15:51385400-51387600	Active TSS	HSMM	muscle
8	chr15:51385400-51387800	Active TSS	Brain Hippocampus Middle	brain
9	chr15:51385600-51386400	Flanking Active TSS	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
10	chr15:51385600-51386400	Bivalent/Poised TSS	Ganglion Eminence derived primary cultured neurospheres	brain
11	chr15:51385600-51386400	Flanking Active TSS	Right Ventricle	heart
12	chr15:51385600-51386400	Bivalent/Poised TSS	Skeletal Muscle Female	skeletal muscle
13	chr15:51385600-51386600	Flanking Bivalent TSS/Enh	Primary neutrophils fromperipheralblood	blood
14	chr15:51385600-51386800	Flanking Bivalent TSS/Enh	Primary hematopoietic stem cells G-CSF-mobilized Male	--
15	chr15:51385600-51386800	Flanking Bivalent TSS/Enh	Monocytes-CD14+_RO01746	blood
16	chr15:51385600-51387200	Active TSS	Colon Smooth Muscle	Colon
17	chr15:51385600-51387400	Flanking Active TSS	Primary hematopoietic stem cells	blood
18	chr15:51385600-51387400	Bivalent Enhancer	Primary Natural Killer cells fromperipheralblood	blood
19	chr15:51385600-51387600	Active TSS	Brain Angular Gyrus	brain
20	chr15:51385600-51387600	Active TSS	Brain Inferior Temporal Lobe	brain
21	chr15:51385600-51387600	Active TSS	Brain Dorsolateral Prefrontal Cortex	brain
22	chr15:51385600-51387800	Bivalent/Poised TSS	H9 Cell Line	embryonic stem cell
23	chr15:51385600-51388000	Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
24	chr15:51385600-51388400	Bivalent/Poised TSS	iPS-15b Cell Line	embryonic stem cell
25	chr15:51385800-51386400	Bivalent Enhancer	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
26	chr15:51385800-51386400	Flanking Bivalent TSS/Enh	iPS DF 19.11 Cell Line	embryonic stem cell
27	chr15:51385800-51386400	Flanking Bivalent TSS/Enh	Duodenum Mucosa	Duodenum
28	chr15:51385800-51386400	Bivalent Enhancer	Placenta Amnion	Placenta Amnion
29	chr15:51385800-51386600	Flanking Bivalent TSS/Enh	Fetal Adrenal Gland	Adrenal Gland
30	chr15:51385800-51386600	Flanking Active TSS	Pancreas	Pancrea
31	chr15:51385800-51386800	Flanking Bivalent TSS/Enh	Cortex derived primary cultured neurospheres	brain
32	chr15:51385800-51386800	Flanking Active TSS	Adipose Nuclei	Adipose
33	chr15:51385800-51386800	Flanking Bivalent TSS/Enh	Fetal Muscle Trunk	muscle
34	chr15:51385800-51386800	Flanking Bivalent TSS/Enh	Fetal Muscle Leg	muscle
35	chr15:51385800-51387200	Bivalent Enhancer	Primary T helper cells fromperipheralblood	blood
36	chr15:51385800-51387400	Bivalent Enhancer	Primary T cells fromperipheralblood	blood
37	chr15:51385800-51387400	Flanking Bivalent TSS/Enh	Primary hematopoietic stem cells short term culture	blood
38	chr15:51385800-51387400	Bivalent Enhancer	Primary T helper cells PMA-I stimulated	--
39	chr15:51385800-51387600	Active TSS	Muscle Satellite Cultured Cells	--
40	chr15:51385800-51387600	Active TSS	Brain Substantia Nigra	brain
41	chr15:51385800-51387600	Active TSS	Left Ventricle	heart
42	chr15:51385800-51387600	Bivalent/Poised TSS	Thymus	Thymus
43	chr15:51385800-51387800	Bivalent/Poised TSS	HUES64 Cell Line	embryonic stem cell
44	chr15:51385800-51387800	Bivalent/Poised TSS	iPS DF 6.9 Cell Line	embryonic stem cell
45	chr15:51385800-51387800	Flanking Bivalent TSS/Enh	Foreskin Melanocyte Primary Cells skin03	Skin
46	chr15:51385800-51387800	Bivalent/Poised TSS	Small Intestine	intestine
47	chr15:51385800-51387800	Bivalent/Poised TSS	NHLF	lung
48	chr15:51385800-51388000	Bivalent/Poised TSS	iPS-18 Cell Line	embryonic stem cell
49	chr15:51385800-51388000	Bivalent/Poised TSS	iPS-20b Cell Line	embryonic stem cell
50	chr15:51385800-51388000	Active TSS	Brain Anterior Caudate	brain

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