Variant report

Variant	rs74013547
Chromosome Location	chr15:54541339-54541340
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 33 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:29)

rs_ID	r²[population]
rs56813223	1.00[AFR][1000 genomes]
rs58116384	0.94[AFR][1000 genomes]
rs58333885	1.00[AFR][1000 genomes]
rs59824714	0.94[AFR][1000 genomes]
rs59907889	1.00[AFR][1000 genomes]
rs59938768	1.00[AFR][1000 genomes]
rs60076059	1.00[AFR][1000 genomes]
rs74013527	0.94[AFR][1000 genomes]
rs74013530	1.00[AFR][1000 genomes]
rs74013531	1.00[AFR][1000 genomes]
rs74013533	1.00[AFR][1000 genomes]
rs74013534	1.00[AFR][1000 genomes]
rs74013535	0.94[AFR][1000 genomes]
rs74013537	1.00[AFR][1000 genomes]
rs74013538	1.00[AFR][1000 genomes]
rs74013539	0.94[AFR][1000 genomes]
rs74013540	1.00[AFR][1000 genomes]
rs74013541	0.94[AFR][1000 genomes]
rs74013542	1.00[AFR][1000 genomes]
rs74013544	1.00[AFR][1000 genomes]
rs74013545	1.00[AFR][1000 genomes]
rs74013548	1.00[AFR][1000 genomes]
rs74013549	1.00[AFR][1000 genomes]
rs74013550	1.00[AFR][1000 genomes]
rs74013551	1.00[AFR][1000 genomes]
rs74013552	1.00[AFR][1000 genomes]
rs74013553	0.80[AFR][1000 genomes]
rs74013554	0.80[AFR][1000 genomes]
rs74013555	1.00[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1052235	chr15:53677524-54618723	Enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent/Poised TSS Active TSS Weak transcription Strong transcription ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
2	nsv542388	chr15:53677524-54618723	Enhancers Active TSS Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Strong transcription ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
3	nsv817539	chr15:54132584-55095235	Weak transcription Flanking Active TSS Enhancers Bivalent/Poised TSS Active TSS Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats Bivalent Enhancer Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	8 gene(s)	inside rSNPs	diseases
4	nsv1043666	chr15:54415970-54548495	Enhancers Strong transcription Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:54519000-54554400	Weak transcription	Aorta	Aorta
2	chr15:54519400-54549600	Weak transcription	Skeletal Muscle Female	skeletal muscle
3	chr15:54531400-54544800	Weak transcription	Fetal Lung	lung

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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