Variant report

Variant	rs74014703
Chromosome Location	chr15:41203390-41203391
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr15:41195654..41197212-chr15:41203181..41205731,2	K562	blood:
2	chr15:41195521..41197212-chr15:41201966..41205731,3	K562	blood:
3	chr15:41195189..41208751-chr15:41218816..41225232,20	MCF-7	breast:
4	chr15:41197462..41204234-chr15:41215803..41223321,13	K562	blood:
5	chr15:41194927..41205036-chr15:41218861..41227276,20	MCF-7	breast:
6	chr15:41198697..41200763-chr15:41203328..41205175,2	MCF-7	breast:
7	chr15:41193987..41204234-chr15:41215915..41223506,12	K562	blood:

Variant related genes	Relation type
ENSG00000251161	Chromatin interaction
ENSG00000128917	Chromatin interaction

Extended variants
information (count: 11 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:5)

rs_ID	r²[population]
rs7165897	1.00[AMR][1000 genomes]
rs7170147	1.00[AMR][1000 genomes]
rs7176208	1.00[AMR][1000 genomes]
rs74011896	1.00[AMR][1000 genomes]
rs74011897	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv904101	chr15:40979651-41275014	Weak transcription Enhancers Flanking Active TSS Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	98 gene(s)	inside rSNPs	diseases
2	esv1819092	chr15:41017682-41255750	Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Flanking Active TSS Weak transcription Strong transcription Active TSS Enhancers Bivalent/Poised TSS Bivalent Enhancer Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	83 gene(s)	inside rSNPs	diseases
3	nsv904103	chr15:41123172-41275014	Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Enhancers Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh Strong transcription Active TSS Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	60 gene(s)	inside rSNPs	diseases
4	nsv904104	chr15:41149824-41234932	Flanking Active TSS Enhancers Bivalent Enhancer Genic enhancers Weak transcription Transcr. at gene 5' and 3' Strong transcription Bivalent/Poised TSS Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	50 gene(s)	inside rSNPs	diseases
5	nsv904105	chr15:41149824-41275014	Flanking Bivalent TSS/Enh Enhancers Weak transcription Flanking Active TSS Strong transcription Active TSS Bivalent Enhancer Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	57 gene(s)	inside rSNPs	diseases
6	esv1819792	chr15:41184722-41234825	Weak transcription Active TSS Strong transcription Flanking Active TSS Transcr. at gene 5' and 3' Enhancers Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	42 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:73 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:41197400-41205600	Enhancers	Lung	lung
2	chr15:41199200-41204600	Enhancers	Liver	Liver
3	chr15:41199400-41206400	Weak transcription	H9 Cell Line	embryonic stem cell
4	chr15:41199600-41203800	Weak transcription	Aorta	Aorta
5	chr15:41199600-41205000	Enhancers	Fetal Intestine Large	intestine
6	chr15:41199600-41205400	Enhancers	Fetal Muscle Leg	muscle
7	chr15:41199800-41203400	Enhancers	Primary monocytes fromperipheralblood	blood
8	chr15:41199800-41204200	Enhancers	Fetal Intestine Small	intestine
9	chr15:41199800-41210000	Enhancers	Fetal Adrenal Gland	Adrenal Gland
10	chr15:41200000-41204200	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
11	chr15:41200000-41204200	Weak transcription	NHEK	skin
12	chr15:41200000-41204400	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
13	chr15:41200000-41204800	Weak transcription	Placenta Amnion	Placenta Amnion
14	chr15:41200000-41209400	Weak transcription	Fetal Brain Female	brain
15	chr15:41200200-41203800	Enhancers	Adipose Nuclei	Adipose
16	chr15:41200200-41209800	Weak transcription	Right Ventricle	heart
17	chr15:41200400-41203400	Weak transcription	HUVEC	blood vessel
18	chr15:41200400-41206600	Weak transcription	Stomach Smooth Muscle	stomach
19	chr15:41200600-41206800	Weak transcription	Brain Germinal Matrix	brain
20	chr15:41201000-41203800	Enhancers	Breast Myoepithelial Primary Cells	Breast
21	chr15:41201000-41205200	Enhancers	Skeletal Muscle Male	skeletal muscle
22	chr15:41201400-41204800	Enhancers	Fetal Stomach	stomach
23	chr15:41201600-41203400	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
24	chr15:41201600-41203400	Enhancers	NHDF-Ad	bronchial
25	chr15:41201600-41203600	Enhancers	Primary neutrophils fromperipheralblood	blood
26	chr15:41201600-41204000	Enhancers	Primary hematopoietic stem cells	blood
27	chr15:41201600-41205000	Enhancers	Spleen	Spleen
28	chr15:41201800-41203400	Enhancers	Primary hematopoietic stem cells short term culture	blood
29	chr15:41201800-41204000	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
30	chr15:41201800-41205400	Enhancers	Placenta	Placenta
31	chr15:41202000-41203400	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
32	chr15:41202000-41204000	Enhancers	Fetal Lung	lung
33	chr15:41202200-41203800	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
34	chr15:41202200-41203800	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
35	chr15:41202200-41203800	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
36	chr15:41202200-41204200	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
37	chr15:41202200-41204200	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
38	chr15:41202200-41205400	Enhancers	Fetal Thymus	thymus
39	chr15:41202200-41208000	Weak transcription	Pancreas	Pancrea
40	chr15:41202400-41203400	Weak transcription	Esophagus	oesophagus
41	chr15:41202400-41203400	Weak transcription	Rectal Mucosa Donor 31	rectum
42	chr15:41202400-41203400	Weak transcription	Sigmoid Colon	Sigmoid Colon
43	chr15:41202400-41203400	Weak transcription	Small Intestine	intestine
44	chr15:41202400-41203600	Weak transcription	Gastric	stomach
45	chr15:41202400-41203800	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
46	chr15:41202400-41203800	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
47	chr15:41202400-41204800	Enhancers	iPS-15b Cell Line	embryonic stem cell
48	chr15:41202400-41205400	Enhancers	GM12878-XiMat	blood
49	chr15:41202400-41210000	Weak transcription	Left Ventricle	heart
50	chr15:41202600-41203600	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin

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