Variant report

Variant	rs74014726
Chromosome Location	chr15:41269305-41269306
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 23 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:19)

rs_ID	r²[population]
rs16971264	0.85[AMR][1000 genomes]
rs2412598	0.85[AMR][1000 genomes]
rs2925344	1.00[AMR][1000 genomes]
rs3101437	0.85[AMR][1000 genomes]
rs4924530	0.83[AMR][1000 genomes]
rs60637101	0.85[AMR][1000 genomes]
rs61731603	1.00[AMR][1000 genomes]
rs6492977	0.85[AMR][1000 genomes]
rs7169092	0.85[AMR][1000 genomes]
rs7174743	1.00[AMR][1000 genomes]
rs74014728	1.00[AMR][1000 genomes]
rs74014729	1.00[AMR][1000 genomes]
rs74014735	1.00[AMR][1000 genomes]
rs74014737	1.00[AMR][1000 genomes]
rs74014742	1.00[AMR][1000 genomes]
rs74014743	1.00[AMR][1000 genomes]
rs8024014	0.83[AMR][1000 genomes]
rs8028578	1.00[AMR][1000 genomes]
rs8030958	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv904101	chr15:40979651-41275014	Weak transcription Enhancers Flanking Active TSS Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	98 gene(s)	inside rSNPs	diseases
2	nsv904103	chr15:41123172-41275014	Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Enhancers Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh Strong transcription Active TSS Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	60 gene(s)	inside rSNPs	diseases
3	nsv904105	chr15:41149824-41275014	Flanking Bivalent TSS/Enh Enhancers Weak transcription Flanking Active TSS Strong transcription Active TSS Bivalent Enhancer Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	57 gene(s)	inside rSNPs	diseases
4	esv1794127	chr15:41245289-41276158	Weak transcription Enhancers Strong transcription Genic enhancers Active TSS Bivalent/Poised TSS Flanking Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:124 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:41246600-41270000	Weak transcription	HUVEC	blood vessel
2	chr15:41252400-41269400	Weak transcription	H9 Cell Line	embryonic stem cell
3	chr15:41252800-41270800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
4	chr15:41258800-41270400	Weak transcription	Rectal Smooth Muscle	rectum
5	chr15:41258800-41270800	Weak transcription	Psoas Muscle	Psoas
6	chr15:41258800-41348400	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
7	chr15:41261200-41269400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
8	chr15:41262000-41271400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
9	chr15:41264000-41275400	Weak transcription	Fetal Brain Male	brain
10	chr15:41264600-41271800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
11	chr15:41264800-41269600	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
12	chr15:41264800-41269800	Weak transcription	K562	blood
13	chr15:41265400-41269400	Weak transcription	Fetal Lung	lung
14	chr15:41265400-41271600	Weak transcription	Stomach Mucosa	stomach
15	chr15:41266000-41274200	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
16	chr15:41266200-41275000	Strong transcription	Fetal Muscle Trunk	muscle
17	chr15:41266600-41274000	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
18	chr15:41266600-41275000	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
19	chr15:41266800-41273800	Strong transcription	Muscle Satellite Cultured Cells	--
20	chr15:41266800-41274000	Strong transcription	Osteobl	bone
21	chr15:41266800-41275200	Strong transcription	Foreskin Fibroblast Primary Cells skin01	Skin
22	chr15:41266800-41277400	Strong transcription	Fetal Muscle Leg	muscle
23	chr15:41266800-41278400	Strong transcription	Brain Dorsolateral Prefrontal Cortex	brain
24	chr15:41266800-41280200	Strong transcription	Fetal Brain Female	brain
25	chr15:41266800-41280400	Strong transcription	Brain Substantia Nigra	brain
26	chr15:41266800-41281400	Strong transcription	Primary T cells fromperipheralblood	blood
27	chr15:41266800-41283800	Strong transcription	A549	lung
28	chr15:41266800-41290000	Strong transcription	Breast Myoepithelial Primary Cells	Breast
29	chr15:41266800-41298400	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
30	chr15:41267000-41270000	Weak transcription	Primary hematopoietic stem cells	blood
31	chr15:41267000-41280600	Strong transcription	Cortex derived primary cultured neurospheres	brain
32	chr15:41267000-41280800	Strong transcription	Brain Germinal Matrix	brain
33	chr15:41267200-41270200	Weak transcription	NHDF-Ad	bronchial
34	chr15:41267200-41272600	Strong transcription	Fetal Adrenal Gland	Adrenal Gland
35	chr15:41267200-41294800	Strong transcription	Primary T cells from cord blood	blood
36	chr15:41267600-41270000	Weak transcription	GM12878-XiMat	blood
37	chr15:41267600-41280600	Strong transcription	Fetal Stomach	stomach
38	chr15:41267600-41294200	Strong transcription	Primary mononuclear cells fromperipheralblood	Blood
39	chr15:41267600-41301200	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
40	chr15:41267800-41270000	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
41	chr15:41267800-41273400	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
42	chr15:41267800-41273400	Strong transcription	Lung	lung
43	chr15:41267800-41274400	Strong transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
44	chr15:41267800-41280600	Strong transcription	Fetal Intestine Large	intestine
45	chr15:41267800-41280800	Strong transcription	Ovary	ovary
46	chr15:41267800-41281000	Strong transcription	H1 Cell Line	embryonic stem cell
47	chr15:41267800-41281000	Strong transcription	HUES64 Cell Line	embryonic stem cell
48	chr15:41267800-41282000	Strong transcription	Sigmoid Colon	Sigmoid Colon
49	chr15:41267800-41284400	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
50	chr15:41267800-41284600	Strong transcription	ES-UCSF4 Cell Line	embryonic stem cell

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links