Variant report

Variant	rs74015023
Chromosome Location	chr16:30634666-30634667
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr16:30405439..30407171-chr16:30633264..30634784,2	K562	blood:

Variant related genes	Relation type
ENSG00000180035	Chromatin interaction
ENSG00000180096	Chromatin interaction

Extended variants
information (count: 8 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:2)

rs_ID	r²[population]
rs2919429	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74015020	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1062456	chr16:30442166-31253997	Weak transcription Flanking Active TSS Enhancers Strong transcription Active TSS Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	437 gene(s)	inside rSNPs	diseases
2	nsv542898	chr16:30442166-31253997	Enhancers Active TSS Strong transcription Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	437 gene(s)	inside rSNPs	diseases
3	nsv905727	chr16:30564526-30689696	Active TSS Flanking Active TSS Weak transcription Genic enhancers Strong transcription Enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	88 gene(s)	inside rSNPs	diseases
4	nsv469724	chr16:30632445-30840263	Strong transcription Transcr. at gene 5' and 3' Weak transcription Enhancers Active TSS Flanking Active TSS Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	143 gene(s)	inside rSNPs	diseases
5	nsv482704	chr16:30632445-30840263	Enhancers Active TSS Weak transcription Genic enhancers Strong transcription Flanking Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	143 gene(s)	inside rSNPs	diseases
6	nsv833188	chr16:30632446-30840263	Active TSS Weak transcription Genic enhancers Strong transcription Enhancers Flanking Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	143 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:21 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr16:30631400-30640000	Weak transcription	Fetal Brain Male	brain
2	chr16:30631800-30640000	Weak transcription	Fetal Intestine Large	intestine
3	chr16:30632400-30636000	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
4	chr16:30632600-30636200	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
5	chr16:30633200-30635600	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
6	chr16:30633400-30635200	Enhancers	Liver	Liver
7	chr16:30633400-30636000	Enhancers	Breast Myoepithelial Primary Cells	Breast
8	chr16:30633800-30635000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
9	chr16:30633800-30636000	Enhancers	K562	blood
10	chr16:30634000-30634800	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
11	chr16:30634000-30635000	Flanking Active TSS	HepG2	liver
12	chr16:30634000-30635200	ZNF genes & repeats	HMEC	breast
13	chr16:30634000-30635400	ZNF genes & repeats	NHEK	skin
14	chr16:30634200-30634800	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
15	chr16:30634200-30634800	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
16	chr16:30634200-30635000	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
17	chr16:30634200-30640000	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
18	chr16:30634400-30640000	Weak transcription	Fetal Kidney	kidney
19	chr16:30634600-30636000	ZNF genes & repeats	IMR90 fetal lung fibroblasts Cell Line	lung
20	chr16:30634600-30640000	Weak transcription	Fetal Intestine Small	intestine
21	chr16:30634600-30640000	Weak transcription	Hela-S3	cervix

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