Variant report

Variant	rs74015028
Chromosome Location	chr16:30677044-30677045
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	POLR2A	chr16:30676954-30679755	GM12878	blood:	n/a	n/a
2	POLR2A	chr16:30676704-30677123	HepG2	liver:	n/a	n/a
3	POLR2A	chr16:30675784-30680362	GM12878	blood:	n/a	n/a

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr16:30665347..30684079-chr16:30697204..30714344,66	MCF-7	breast:
2	chr16:30676794..30679147-chr16:30771507..30774609,3	MCF-7	breast:

Variant related genes	Relation type
FBRS	TF binding region
ENSG00000080603	Chromatin interaction
ENSG00000261840	Chromatin interaction
ENSG00000103549	Chromatin interaction
ENSG00000196118	Chromatin interaction
ENSG00000222287	Chromatin interaction

Extended variants
information (count: 26 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:14)

rs_ID	r²[population]
rs55764844	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs55794634	1.00[AMR][1000 genomes]
rs56371701	1.00[AMR][1000 genomes]
rs59324423	1.00[AMR][1000 genomes]
rs59594717	1.00[AMR][1000 genomes]
rs59674151	1.00[AMR][1000 genomes]
rs60628262	1.00[AMR][1000 genomes]
rs60749749	1.00[AMR][1000 genomes]
rs60854012	1.00[AMR][1000 genomes]
rs74015013	1.00[AMR][1000 genomes]
rs74015021	1.00[AMR][1000 genomes]
rs74015027	1.00[AMR][1000 genomes]
rs74015042	1.00[AMR][1000 genomes]
rs74015052	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:12 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1062456	chr16:30442166-31253997	Weak transcription Flanking Active TSS Enhancers Strong transcription Active TSS Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	437 gene(s)	inside rSNPs	diseases
2	nsv542898	chr16:30442166-31253997	Enhancers Active TSS Strong transcription Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	437 gene(s)	inside rSNPs	diseases
3	nsv905727	chr16:30564526-30689696	Active TSS Flanking Active TSS Weak transcription Genic enhancers Strong transcription Enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	88 gene(s)	inside rSNPs	diseases
4	nsv469724	chr16:30632445-30840263	Strong transcription Transcr. at gene 5' and 3' Weak transcription Enhancers Active TSS Flanking Active TSS Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	143 gene(s)	inside rSNPs	diseases
5	nsv482704	chr16:30632445-30840263	Enhancers Active TSS Weak transcription Genic enhancers Strong transcription Flanking Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	143 gene(s)	inside rSNPs	diseases
6	nsv833188	chr16:30632446-30840263	Active TSS Weak transcription Genic enhancers Strong transcription Enhancers Flanking Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	143 gene(s)	inside rSNPs	diseases
7	nsv1064134	chr16:30640293-31087327	Genic enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS Strong transcription Weak transcription Enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	238 gene(s)	inside rSNPs	diseases
8	nsv905728	chr16:30642867-30928970	Flanking Active TSS Weak transcription Enhancers Active TSS Genic enhancers Strong transcription Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	171 gene(s)	inside rSNPs	diseases
9	nsv905729	chr16:30642867-31247924	Active TSS Bivalent/Poised TSS Flanking Active TSS Enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription Genic enhancers Weak transcription Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	387 gene(s)	inside rSNPs	diseases
10	nsv905730	chr16:30667031-30681816	Genic enhancers Active TSS Flanking Active TSS Strong transcription Weak transcription Transcr. at gene 5' and 3' Enhancers Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	49 gene(s)	inside rSNPs	diseases
11	nsv905731	chr16:30667031-30685089	Genic enhancers Transcr. at gene 5' and 3' Strong transcription Active TSS Enhancers Flanking Active TSS Weak transcription Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	49 gene(s)	inside rSNPs	diseases
12	esv1825223	chr16:30669091-30971810	Weak transcription Enhancers Strong transcription Bivalent/Poised TSS Genic enhancers Flanking Active TSS Transcr. at gene 5' and 3' Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	191 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:114 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr16:30672400-30678000	Genic enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
2	chr16:30672600-30682000	Strong transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
3	chr16:30672800-30678800	Weak transcription	Stomach Mucosa	stomach
4	chr16:30672800-30679600	Strong transcription	HSMMtube	muscle
5	chr16:30672800-30682000	Strong transcription	Lung	lung
6	chr16:30672800-30682000	Strong transcription	A549	lung
7	chr16:30673000-30679600	Strong transcription	NHEK	skin
8	chr16:30673000-30682000	Strong transcription	Aorta	Aorta
9	chr16:30673000-30682400	Genic enhancers	Placenta	Placenta
10	chr16:30673000-30682400	Strong transcription	Sigmoid Colon	Sigmoid Colon
11	chr16:30673200-30677600	Strong transcription	Placenta Amnion	Placenta Amnion
12	chr16:30673200-30677800	Strong transcription	Osteobl	bone
13	chr16:30673200-30678200	Weak transcription	Fetal Heart	heart
14	chr16:30673200-30682400	Strong transcription	Cortex derived primary cultured neurospheres	brain
15	chr16:30673200-30682600	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
16	chr16:30673200-30682600	Strong transcription	Ganglion Eminence derived primary cultured neurospheres	brain
17	chr16:30673200-30682600	Strong transcription	Ovary	ovary
18	chr16:30673400-30678800	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
19	chr16:30673400-30681200	Strong transcription	Fetal Lung	lung
20	chr16:30673400-30682600	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
21	chr16:30673400-30682600	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
22	chr16:30673400-30682600	Strong transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
23	chr16:30673400-30682800	Strong transcription	Primary monocytes fromperipheralblood	blood
24	chr16:30673600-30677400	Strong transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
25	chr16:30673600-30681800	Strong transcription	HepG2	liver
26	chr16:30673600-30682600	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
27	chr16:30673600-30682600	Strong transcription	Fetal Stomach	stomach
28	chr16:30673600-30683800	Strong transcription	Muscle Satellite Cultured Cells	--
29	chr16:30673800-30680600	Strong transcription	Liver	Liver
30	chr16:30673800-30682000	Strong transcription	Rectal Mucosa Donor 31	rectum
31	chr16:30673800-30682200	Strong transcription	Esophagus	oesophagus
32	chr16:30673800-30682400	Strong transcription	Fetal Muscle Trunk	muscle
33	chr16:30673800-30682400	Strong transcription	Rectal Smooth Muscle	rectum
34	chr16:30673800-30682600	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
35	chr16:30673800-30682600	Strong transcription	Brain Substantia Nigra	brain
36	chr16:30673800-30682600	Strong transcription	Fetal Brain Female	brain
37	chr16:30674000-30682400	Strong transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
38	chr16:30674000-30682600	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
39	chr16:30674000-30682600	Strong transcription	Left Ventricle	heart
40	chr16:30674200-30679800	Weak transcription	Right Atrium	heart
41	chr16:30674200-30679800	Strong transcription	HMEC	breast
42	chr16:30674200-30682600	Strong transcription	Brain Germinal Matrix	brain
43	chr16:30674200-30682600	Strong transcription	Monocytes-CD14+_RO01746	blood
44	chr16:30674400-30679400	Strong transcription	Primary B cells from cord blood	blood
45	chr16:30674600-30682600	Strong transcription	Primary hematopoietic stem cells short term culture	blood
46	chr16:30674600-30683000	Strong transcription	Primary neutrophils fromperipheralblood	blood
47	chr16:30674800-30681800	Strong transcription	Small Intestine	intestine
48	chr16:30674800-30683600	Strong transcription	Thymus	Thymus
49	chr16:30675000-30678000	Genic enhancers	Right Ventricle	heart
50	chr16:30675000-30679400	Strong transcription	Pancreatic Islets	Pancreatic Islet

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