Variant report

Variant	rs74015060
Chromosome Location	chr16:31019439-31019440
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:9)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:9 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr16:31017556..31020249-chr16:31190322..31192799,3	K562	blood:
2	chr16:30797763..30800233-chr16:31019158..31021994,2	K562	blood:
3	chr16:31007064..31010034-chr16:31018671..31022251,4	MCF-7	breast:
4	chr16:31017785..31020603-chr16:31020668..31023022,2	MCF-7	breast:
5	chr16:31012635..31015487-chr16:31017692..31019843,2	K562	blood:
6	chr16:31017113..31020249-chr16:31190318..31192799,3	K562	blood:
7	chr16:31018157..31021471-chr16:31041251..31044344,3	K562	blood:
8	chr16:31012830..31015179-chr16:31017421..31020382,2	MCF-7	breast:
9	chr16:31018219..31021809-chr16:31044070..31046311,3	K562	blood:

No data

Variant related genes	Relation type
ENSG00000089280	Chromatin interaction
ENSG00000099365	Chromatin interaction
ENSG00000102870	Chromatin interaction
ENSG00000103496	Chromatin interaction

Extended variants
information (count: 16 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:3)

rs_ID	r²[population]
rs58115648	0.83[AMR][1000 genomes]
rs59883711	0.83[AMR][1000 genomes]
rs74015061	0.83[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:13 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1062456	chr16:30442166-31253997	Weak transcription Flanking Active TSS Enhancers Strong transcription Active TSS Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	437 gene(s)	inside rSNPs	diseases
2	nsv542898	chr16:30442166-31253997	Enhancers Active TSS Strong transcription Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	437 gene(s)	inside rSNPs	diseases
3	nsv1064134	chr16:30640293-31087327	Genic enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS Strong transcription Weak transcription Enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	238 gene(s)	inside rSNPs	diseases
4	nsv905729	chr16:30642867-31247924	Active TSS Bivalent/Poised TSS Flanking Active TSS Enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription Genic enhancers Weak transcription Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	387 gene(s)	inside rSNPs	diseases
5	nsv431451	chr16:30682399-31340999	Transcr. at gene 5' and 3' Genic enhancers Weak transcription Flanking Active TSS Strong transcription Active TSS Enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	350 gene(s)	inside rSNPs	diseases
6	nsv833191	chr16:30864242-31048051	Flanking Active TSS Weak transcription Enhancers Strong transcription Active TSS Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	115 gene(s)	inside rSNPs	diseases
7	nsv905734	chr16:30877544-31191482	Active TSS Strong transcription Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	271 gene(s)	inside rSNPs	diseases
8	nsv905735	chr16:30890538-31247924	Strong transcription Genic enhancers Active TSS Weak transcription Flanking Active TSS Bivalent Enhancer Enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	264 gene(s)	inside rSNPs	diseases
9	nsv457483	chr16:30903679-31191482	Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Genic enhancers Strong transcription Enhancers ZNF genes & repeats Weak transcription Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	253 gene(s)	inside rSNPs	diseases
10	nsv571820	chr16:30903679-31191482	Enhancers Genic enhancers Bivalent/Poised TSS Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer Strong transcription Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	253 gene(s)	inside rSNPs	diseases
11	esv1797877	chr16:30948643-31188432	Flanking Active TSS Enhancers Weak transcription Strong transcription Active TSS Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	114 gene(s)	inside rSNPs	diseases
12	nsv833193	chr16:30960796-31133604	Enhancers Active TSS Weak transcription Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Strong transcription Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	109 gene(s)	inside rSNPs	diseases
13	nsv916994	chr16:30971725-31078117	Active TSS Strong transcription Enhancers Weak transcription Genic enhancers Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	45 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:41 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr16:31009000-31020400	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
2	chr16:31009200-31020400	Weak transcription	Brain Angular Gyrus	brain
3	chr16:31009200-31034400	Weak transcription	Right Atrium	heart
4	chr16:31009400-31020600	Weak transcription	H9 Cell Line	embryonic stem cell
5	chr16:31009800-31021000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
6	chr16:31010200-31020800	Weak transcription	HUES48 Cell Line	embryonic stem cell
7	chr16:31011200-31019800	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
8	chr16:31012600-31020400	Weak transcription	Brain Germinal Matrix	brain
9	chr16:31013800-31021000	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
10	chr16:31014200-31019600	Weak transcription	Cortex derived primary cultured neurospheres	brain
11	chr16:31015400-31020600	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
12	chr16:31015800-31020600	Weak transcription	Breast Myoepithelial Primary Cells	Breast
13	chr16:31016800-31021000	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
14	chr16:31017000-31021000	Enhancers	NHLF	lung
15	chr16:31017600-31019800	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
16	chr16:31017600-31020000	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
17	chr16:31018000-31019800	Weak transcription	Fetal Brain Male	brain
18	chr16:31018000-31020600	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
19	chr16:31018000-31027400	Weak transcription	A549	lung
20	chr16:31018200-31021000	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
21	chr16:31018400-31020400	Weak transcription	Brain Inferior Temporal Lobe	brain
22	chr16:31018600-31020400	Weak transcription	Fetal Brain Female	brain
23	chr16:31018600-31021000	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
24	chr16:31018800-31019600	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
25	chr16:31018800-31022200	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
26	chr16:31019000-31021000	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
27	chr16:31019000-31021000	Enhancers	Osteobl	bone
28	chr16:31019200-31019600	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
29	chr16:31019200-31019800	Weak transcription	Brain Cingulate Gyrus	brain
30	chr16:31019200-31020000	Enhancers	ES-I3 Cell Line	embryonic stem cell
31	chr16:31019200-31020000	Bivalent Enhancer	Foreskin Keratinocyte Primary Cells skin02	Skin
32	chr16:31019200-31020000	Enhancers	HMEC	breast
33	chr16:31019200-31020200	Enhancers	HSMM	muscle
34	chr16:31019200-31020800	Weak transcription	HUES6 Cell Line	embryonic stem cell
35	chr16:31019200-31021000	Weak transcription	iPS-20b Cell Line	embryonic stem cell
36	chr16:31019200-31021200	Enhancers	Muscle Satellite Cultured Cells	--
37	chr16:31019400-31019600	Bivalent Enhancer	Stomach Smooth Muscle	stomach
38	chr16:31019400-31019800	Active TSS	NH-A	brain
39	chr16:31019400-31020800	Weak transcription	H1 Cell Line	embryonic stem cell
40	chr16:31019400-31020800	Weak transcription	iPS-15b Cell Line	embryonic stem cell
41	chr16:31019400-31020800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links