Variant report

Variant	rs74015064
Chromosome Location	chr16:31098223-31098224
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr16:31096333..31099820-chr16:31152202..31155374,3	MCF-7	breast:
2	chr16:31096486..31099181-chr16:31109176..31111486,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000178226	Chromatin interaction

Extended variants
information (count: 27 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:14)

rs_ID	r²[population]
rs41371846	1.00[AMR][1000 genomes]
rs41520646	1.00[AMR][1000 genomes]
rs55794634	1.00[AMR][1000 genomes]
rs56751167	1.00[AMR][1000 genomes]
rs57483806	1.00[AMR][1000 genomes]
rs58114676	1.00[AMR][1000 genomes]
rs58195196	1.00[AFR][1000 genomes]
rs61417139	1.00[AMR][1000 genomes]
rs74015052	1.00[AMR][1000 genomes]
rs74015067	1.00[AMR][1000 genomes]
rs74015073	1.00[AMR][1000 genomes]
rs74015088	1.00[AMR][1000 genomes]
rs74015098	1.00[AMR][1000 genomes]
rs74015100	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:13 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1062456	chr16:30442166-31253997	Weak transcription Flanking Active TSS Enhancers Strong transcription Active TSS Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	437 gene(s)	inside rSNPs	diseases
2	nsv542898	chr16:30442166-31253997	Enhancers Active TSS Strong transcription Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	437 gene(s)	inside rSNPs	diseases
3	nsv905729	chr16:30642867-31247924	Active TSS Bivalent/Poised TSS Flanking Active TSS Enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription Genic enhancers Weak transcription Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	387 gene(s)	inside rSNPs	diseases
4	nsv431451	chr16:30682399-31340999	Transcr. at gene 5' and 3' Genic enhancers Weak transcription Flanking Active TSS Strong transcription Active TSS Enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	350 gene(s)	inside rSNPs	diseases
5	nsv905734	chr16:30877544-31191482	Active TSS Strong transcription Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	271 gene(s)	inside rSNPs	diseases
6	nsv905735	chr16:30890538-31247924	Strong transcription Genic enhancers Active TSS Weak transcription Flanking Active TSS Bivalent Enhancer Enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	264 gene(s)	inside rSNPs	diseases
7	nsv457483	chr16:30903679-31191482	Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Genic enhancers Strong transcription Enhancers ZNF genes & repeats Weak transcription Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	253 gene(s)	inside rSNPs	diseases
8	nsv571820	chr16:30903679-31191482	Enhancers Genic enhancers Bivalent/Poised TSS Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer Strong transcription Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	253 gene(s)	inside rSNPs	diseases
9	esv1797877	chr16:30948643-31188432	Flanking Active TSS Enhancers Weak transcription Strong transcription Active TSS Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	114 gene(s)	inside rSNPs	diseases
10	nsv833193	chr16:30960796-31133604	Enhancers Active TSS Weak transcription Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Strong transcription Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	109 gene(s)	inside rSNPs	diseases
11	nsv905740	chr16:31066249-31232437	Flanking Active TSS Enhancers Weak transcription Strong transcription Transcr. at gene 5' and 3' Active TSS Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	202 gene(s)	inside rSNPs	diseases
12	nsv905741	chr16:31066249-31247924	Genic enhancers Weak transcription Flanking Active TSS Active TSS Enhancers Strong transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	202 gene(s)	inside rSNPs	diseases
13	esv993244	chr16:31091981-31101565	Weak transcription Enhancers Strong transcription Genic enhancers Transcr. at gene 5' and 3' Flanking Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	13 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:124 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr16:31086400-31104400	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
2	chr16:31086600-31104200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
3	chr16:31086600-31105200	Weak transcription	Right Atrium	heart
4	chr16:31087200-31102000	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
5	chr16:31087200-31103800	Strong transcription	NHLF	lung
6	chr16:31087200-31104200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
7	chr16:31087400-31099200	Strong transcription	HepG2	liver
8	chr16:31087400-31101800	Strong transcription	IMR90 fetal lung fibroblasts Cell Line	lung
9	chr16:31087400-31102800	Strong transcription	Thymus	Thymus
10	chr16:31087400-31103000	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
11	chr16:31087400-31104400	Strong transcription	Primary T cells from cord blood	blood
12	chr16:31087400-31104400	Strong transcription	Fetal Intestine Small	intestine
13	chr16:31087600-31098400	Strong transcription	Fetal Thymus	thymus
14	chr16:31087600-31100200	Weak transcription	Hela-S3	cervix
15	chr16:31087600-31103000	Strong transcription	HUES6 Cell Line	embryonic stem cell
16	chr16:31087600-31103000	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
17	chr16:31087800-31101800	Strong transcription	Liver	Liver
18	chr16:31087800-31101800	Strong transcription	Placenta Amnion	Placenta Amnion
19	chr16:31087800-31102200	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
20	chr16:31087800-31102800	Strong transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
21	chr16:31087800-31103000	Strong transcription	Primary T helper 17 cells PMA-I stimulated	--
22	chr16:31087800-31104000	Strong transcription	Breast Myoepithelial Primary Cells	Breast
23	chr16:31088000-31099400	Strong transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
24	chr16:31090000-31105200	Weak transcription	Fetal Kidney	kidney
25	chr16:31090400-31104200	Weak transcription	Primary T killer memory cells from peripheral blood	blood
26	chr16:31090600-31099000	Strong transcription	Esophagus	oesophagus
27	chr16:31090800-31101200	Weak transcription	HMEC	breast
28	chr16:31090800-31101800	Weak transcription	A549	lung
29	chr16:31090800-31102000	Weak transcription	HUVEC	blood vessel
30	chr16:31090800-31102200	Weak transcription	Primary B cells from cord blood	blood
31	chr16:31091000-31104000	Weak transcription	Primary T helper naive cells from peripheral blood	blood
32	chr16:31091200-31099200	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
33	chr16:31091400-31099000	Strong transcription	Primary monocytes fromperipheralblood	blood
34	chr16:31091400-31102800	Strong transcription	Primary hematopoietic stem cells short term culture	blood
35	chr16:31091800-31100800	Strong transcription	Fetal Intestine Large	intestine
36	chr16:31092000-31104600	Weak transcription	Pancreatic Islets	Pancreatic Islet
37	chr16:31092600-31101800	Weak transcription	iPS-18 Cell Line	embryonic stem cell
38	chr16:31092600-31101800	Weak transcription	NHDF-Ad	bronchial
39	chr16:31092800-31100400	Weak transcription	Aorta	Aorta
40	chr16:31092800-31101800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
41	chr16:31093000-31101800	Weak transcription	Primary hematopoietic stem cells	blood
42	chr16:31093000-31104600	Weak transcription	Small Intestine	intestine
43	chr16:31093400-31101800	Weak transcription	iPS-15b Cell Line	embryonic stem cell
44	chr16:31093400-31103800	Weak transcription	Fetal Brain Male	brain
45	chr16:31093600-31099000	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
46	chr16:31093600-31102800	Strong transcription	Lung	lung
47	chr16:31093600-31104400	Strong transcription	Cortex derived primary cultured neurospheres	brain
48	chr16:31093600-31104400	Strong transcription	Fetal Stomach	stomach
49	chr16:31093600-31104800	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
50	chr16:31093800-31098600	Genic enhancers	Fetal Adrenal Gland	Adrenal Gland

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