Variant report

Variant	rs74016644
Chromosome Location	chr15:54813427-54813428
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 13 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:10)

rs_ID	r²[population]
rs57273810	0.94[AFR][1000 genomes]
rs57439022	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs58513964	0.96[AFR][1000 genomes]
rs58756936	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs60711672	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs60912017	0.94[AFR][1000 genomes]
rs62022402	0.98[AFR][1000 genomes]
rs62022403	0.98[AFR][1000 genomes]
rs74016645	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs8024541	0.94[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv817539	chr15:54132584-55095235	Weak transcription Flanking Active TSS Enhancers Bivalent/Poised TSS Active TSS Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats Bivalent Enhancer Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	8 gene(s)	inside rSNPs	diseases
2	nsv1038660	chr15:54756184-55039913	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Active TSS Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	2 gene(s)	inside rSNPs	diseases
3	esv275383	chr15:54810814-54814852	Enhancers Weak transcription Flanking Active TSS Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:13 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:54807000-54820600	Weak transcription	Fetal Brain Male	brain
2	chr15:54809000-54814000	Weak transcription	Ovary	ovary
3	chr15:54809600-54814400	Enhancers	Fetal Lung	lung
4	chr15:54811000-54869600	Weak transcription	Aorta	Aorta
5	chr15:54811800-54813800	Weak transcription	Fetal Kidney	kidney
6	chr15:54812000-54813600	Enhancers	Primary T cells from cord blood	blood
7	chr15:54812000-54814400	Enhancers	Primary hematopoietic stem cells	blood
8	chr15:54812200-54813600	Enhancers	Fetal Adrenal Gland	Adrenal Gland
9	chr15:54812200-54814200	Enhancers	Primary hematopoietic stem cells short term culture	blood
10	chr15:54812400-54814400	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
11	chr15:54812400-54814400	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
12	chr15:54812800-54815800	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
13	chr15:54813000-54814000	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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