Variant report

Variant	rs74016912
Chromosome Location	chr15:58865388-58865389
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 44 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:40)

rs_ID	r²[population]
rs11071390	1.00[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs11639204	1.00[EUR][1000 genomes]
rs12901512	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1839927	1.00[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs1839928	1.00[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs1869129	0.92[EUR][1000 genomes]
rs1869130	1.00[EUR][1000 genomes]
rs1869131	1.00[EUR][1000 genomes]
rs2414593	1.00[EUR][1000 genomes]
rs2414594	1.00[EUR][1000 genomes]
rs2414596	1.00[EUR][1000 genomes]
rs2414597	1.00[EUR][1000 genomes]
rs2414598	1.00[EUR][1000 genomes]
rs2414599	1.00[EUR][1000 genomes]
rs2414600	1.00[EUR][1000 genomes]
rs2414601	1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs28465149	1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs34021016	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs35412158	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs3829461	1.00[EUR][1000 genomes]
rs3829462	1.00[EUR][1000 genomes]
rs3829463	1.00[EUR][1000 genomes]
rs4444272	1.00[EUR][1000 genomes]
rs4774305	1.00[EUR][1000 genomes]
rs4775079	1.00[EUR][1000 genomes]
rs55913623	1.00[EUR][1000 genomes]
rs71478677	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs71478678	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7170227	1.00[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs7179747	1.00[EUR][1000 genomes]
rs7179938	1.00[EUR][1000 genomes]
rs7179940	1.00[EUR][1000 genomes]
rs7180130	1.00[EUR][1000 genomes]
rs7181367	1.00[EUR][1000 genomes]
rs7181592	1.00[EUR][1000 genomes]
rs74016913	0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs74016918	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs74016919	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs8026372	1.00[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs8030903	1.00[EUR][1000 genomes];0.82[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1051058	chr15:58519922-59092530	Strong transcription Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	50 gene(s)	inside rSNPs	diseases
2	nsv542401	chr15:58519922-59092530	Strong transcription Weak transcription Active TSS Flanking Active TSS Enhancers Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	50 gene(s)	inside rSNPs	diseases
3	nsv1043041	chr15:58744505-58876327	Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Strong transcription ZNF genes & repeats Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
4	nsv569601	chr15:58800766-58866156	Weak transcription Enhancers Flanking Active TSS Active TSS Bivalent Enhancer Strong transcription Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:12 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:58854800-58868400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr15:58859000-58865600	Weak transcription	Liver	Liver
3	chr15:58860800-58865600	Weak transcription	Duodenum Mucosa	Duodenum
4	chr15:58860800-58865600	Weak transcription	Fetal Thymus	thymus
5	chr15:58860800-58865800	Weak transcription	Stomach Mucosa	stomach
6	chr15:58860800-58866000	Weak transcription	Thymus	Thymus
7	chr15:58861200-58866200	Weak transcription	Primary T cells from cord blood	blood
8	chr15:58864200-58867800	Enhancers	HepG2	liver
9	chr15:58864800-58867800	Enhancers	Fetal Intestine Large	intestine
10	chr15:58865000-58865400	Weak transcription	Rectal Mucosa Donor 31	rectum
11	chr15:58865000-58867200	Enhancers	Fetal Intestine Small	intestine
12	chr15:58865000-58867200	Enhancers	Rectal Mucosa Donor 29	rectum

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links