Variant report

Variant	rs74017062
Chromosome Location	chr15:58213053-58213054
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr15:58211017..58213886-chr15:58215775..58217825,2	K562	blood:

Extended variants
information (count: 6 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:2)

rs_ID	r²[population]
rs74017058	0.82[AFR][1000 genomes]
rs74017060	0.82[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1038667	chr15:57933076-58481870	Flanking Active TSS Enhancers Genic enhancers Active TSS Weak transcription Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	22 gene(s)	inside rSNPs	diseases
2	nsv542400	chr15:57933076-58481870	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Strong transcription Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	22 gene(s)	inside rSNPs	diseases
3	nsv833023	chr15:58161839-58340174	Enhancers Weak transcription Bivalent Enhancer ZNF genes & repeats Flanking Active TSS Strong transcription Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Active TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	5 gene(s)	inside rSNPs	diseases
4	nsv569593	chr15:58201698-58308650	Enhancers Weak transcription Bivalent Enhancer Strong transcription Flanking Active TSS ZNF genes & repeats Active TSS Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:28 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:58207200-58214600	Weak transcription	Fetal Kidney	kidney
2	chr15:58207400-58214600	Weak transcription	Sigmoid Colon	Sigmoid Colon
3	chr15:58207600-58215000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
4	chr15:58208800-58213200	Weak transcription	Right Ventricle	heart
5	chr15:58209200-58214800	Weak transcription	Lung	lung
6	chr15:58209200-58215000	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
7	chr15:58209400-58213200	Weak transcription	HSMMtube	muscle
8	chr15:58209400-58213800	Weak transcription	Right Atrium	heart
9	chr15:58209400-58214600	Weak transcription	Fetal Lung	lung
10	chr15:58210200-58213200	Weak transcription	Ovary	ovary
11	chr15:58211000-58214400	Weak transcription	Pancreas	Pancrea
12	chr15:58211200-58214200	Weak transcription	Liver	Liver
13	chr15:58211400-58213200	Weak transcription	Psoas Muscle	Psoas
14	chr15:58211800-58213400	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
15	chr15:58211800-58213600	Enhancers	Stomach Mucosa	stomach
16	chr15:58211800-58217200	Enhancers	Muscle Satellite Cultured Cells	--
17	chr15:58212000-58213400	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
18	chr15:58212200-58213400	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
19	chr15:58212200-58216400	Enhancers	Left Ventricle	heart
20	chr15:58212400-58213200	Bivalent Enhancer	Adipose Nuclei	Adipose
21	chr15:58212400-58213400	Enhancers	Fetal Heart	heart
22	chr15:58212400-58217400	Enhancers	Fetal Muscle Leg	muscle
23	chr15:58212600-58215200	Enhancers	Skeletal Muscle Male	skeletal muscle
24	chr15:58212600-58217000	Enhancers	Skeletal Muscle Female	skeletal muscle
25	chr15:58212800-58213800	Weak transcription	Rectal Mucosa Donor 31	rectum
26	chr15:58212800-58214400	Weak transcription	Spleen	Spleen
27	chr15:58212800-58216000	Weak transcription	Esophagus	oesophagus
28	chr15:58213000-58215400	Enhancers	HUVEC	blood vessel

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