Variant report

Variant	rs74017311
Chromosome Location	chr15:59224742-59224743
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:13)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:13 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr15:59223596..59226559-chr15:59396307..59399219,5	K562	blood:
2	chr15:59202614..59206575-chr15:59224317..59226928,5	MCF-7	breast:
3	chr15:59040867..59044243-chr15:59224539..59228117,4	K562	blood:
4	chr15:59061037..59064884-chr15:59224205..59227723,8	K562	blood:
5	chr15:59223805..59226728-chr15:59396182..59398979,2	MCF-7	breast:
6	chr15:59086940..59088452-chr15:59224018..59225605,2	K562	blood:
7	chr15:59061870..59064465-chr15:59224425..59227494,5	K562	blood:
8	chr15:59204944..59209018-chr15:59223573..59227454,4	K562	blood:
9	chr15:59224236..59226559-chr15:59396307..59398942,5	K562	blood:
10	chr15:59188873..59192935-chr15:59224019..59226745,3	MCF-7	breast:
11	chr15:59204944..59207520-chr15:59224526..59227454,2	K562	blood:
12	chr15:59223432..59227578-chr15:59278800..59283796,7	K562	blood:
13	chr15:59223432..59227292-chr15:59278800..59280721,3	K562	blood:

No data

Variant related genes	Relation type
ENSG00000137776	Chromatin interaction
ENSG00000157456	Chromatin interaction
ENSG00000137845	Chromatin interaction
ENSG00000128923	Chromatin interaction
ENSG00000245975	Chromatin interaction
ENSG00000157450	Chromatin interaction

Extended variants
information (count: 7 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:3)

rs_ID	r²[population]
rs16940888	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs55790681	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs58305198	0.82[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv34110	chr15:58949991-59381634	Weak transcription Bivalent Enhancer Strong transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	87 gene(s)	inside rSNPs	diseases
2	nsv527307	chr15:59103328-60018487	Enhancers Genic enhancers Weak transcription Flanking Bivalent TSS/Enh Strong transcription Flanking Active TSS Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	145 gene(s)	inside rSNPs	diseases
3	nsv904270	chr15:59140329-59238415	Genic enhancers Weak transcription Flanking Active TSS Active TSS Strong transcription Enhancers ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	48 gene(s)	inside rSNPs	diseases
4	esv1850946	chr15:59174539-59429160	Enhancers Genic enhancers Weak transcription Strong transcription Flanking Active TSS Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	70 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:127 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:59197200-59225000	Weak transcription	Gastric	stomach
2	chr15:59219800-59225000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
3	chr15:59219800-59225000	Weak transcription	Spleen	Spleen
4	chr15:59223000-59225000	Weak transcription	Lung	lung
5	chr15:59223200-59225400	Active TSS	Right Atrium	heart
6	chr15:59223200-59226400	Active TSS	H1 Cell Line	embryonic stem cell
7	chr15:59223400-59225000	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Female	--
8	chr15:59223400-59226400	Active TSS	Foreskin Keratinocyte Primary Cells skin02	Skin
9	chr15:59223400-59226400	Active TSS	Psoas Muscle	Psoas
10	chr15:59223400-59226600	Active TSS	H9 Cell Line	embryonic stem cell
11	chr15:59223400-59226800	Active TSS	HSMMtube	muscle
12	chr15:59223400-59227000	Active TSS	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
13	chr15:59223600-59224800	Active TSS	HepG2	liver
14	chr15:59223600-59226200	Active TSS	Foreskin Fibroblast Primary Cells skin01	Skin
15	chr15:59223600-59226400	Active TSS	Thymus	Thymus
16	chr15:59223600-59226400	Active TSS	NHLF	lung
17	chr15:59223600-59226600	Active TSS	ES-UCSF4 Cell Line	embryonic stem cell
18	chr15:59223600-59226600	Active TSS	Aorta	Aorta
19	chr15:59223600-59226600	Active TSS	Right Ventricle	heart
20	chr15:59223600-59226800	Active TSS	ES-WA7 Cell Line	embryonic stem cell
21	chr15:59223600-59226800	Active TSS	HUES6 Cell Line	embryonic stem cell
22	chr15:59223800-59226200	Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
23	chr15:59223800-59226200	Active TSS	Fetal Thymus	thymus
24	chr15:59223800-59226200	Active TSS	NHEK	skin
25	chr15:59223800-59226400	Active TSS	HUES48 Cell Line	embryonic stem cell
26	chr15:59223800-59226400	Active TSS	iPS-15b Cell Line	embryonic stem cell
27	chr15:59223800-59226400	Active TSS	iPS-18 Cell Line	embryonic stem cell
28	chr15:59223800-59226400	Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
29	chr15:59223800-59226400	Active TSS	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
30	chr15:59223800-59226400	Active TSS	Rectal Mucosa Donor 31	rectum
31	chr15:59223800-59226400	Active TSS	GM12878-XiMat	blood
32	chr15:59223800-59226400	Active TSS	HMEC	breast
33	chr15:59223800-59226400	Active TSS	HSMM	muscle
34	chr15:59223800-59226400	Active TSS	K562	blood
35	chr15:59223800-59226400	Active TSS	NHDF-Ad	bronchial
36	chr15:59223800-59226600	Active TSS	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
37	chr15:59223800-59226600	Active TSS	iPS-20b Cell Line	embryonic stem cell
38	chr15:59223800-59226600	Active TSS	Foreskin Melanocyte Primary Cells skin03	Skin
39	chr15:59223800-59226800	Active TSS	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
40	chr15:59223800-59226800	Active TSS	Breast Myoepithelial Primary Cells	Breast
41	chr15:59223800-59227200	Active TSS	ES-I3 Cell Line	embryonic stem cell
42	chr15:59224000-59225000	Flanking Active TSS	Primary T helper cells fromperipheralblood	blood
43	chr15:59224000-59225000	Flanking Active TSS	Cortex derived primary cultured neurospheres	brain
44	chr15:59224000-59225000	Flanking Active TSS	Fetal Brain Male	brain
45	chr15:59224000-59226200	Active TSS	Muscle Satellite Cultured Cells	--
46	chr15:59224000-59226200	Active TSS	Ganglion Eminence derived primary cultured neurospheres	brain
47	chr15:59224000-59226400	Active TSS	Primary T cells effector/memory enriched fromperipheralblood	blood
48	chr15:59224000-59226400	Active TSS	Colon Smooth Muscle	Colon
49	chr15:59224000-59226400	Active TSS	Fetal Stomach	stomach
50	chr15:59224000-59226400	Active TSS	Stomach Smooth Muscle	stomach

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