Variant report

Variant	rs74017350
Chromosome Location	chr15:59369201-59369202
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr15:59357692..59360268-chr15:59368607..59371254,2	K562	blood:
2	chr15:59367630..59369512-chr15:59369676..59371337,2	K562	blood:

Extended variants
information (count: 22 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:14)

rs_ID	r²[population]
rs10519000	1.00[AMR][1000 genomes]
rs28383511	1.00[AMR][1000 genomes]
rs55646764	1.00[AMR][1000 genomes]
rs56353210	1.00[AMR][1000 genomes]
rs57267136	1.00[AMR][1000 genomes]
rs58003688	1.00[AMR][1000 genomes]
rs60185666	1.00[AMR][1000 genomes]
rs7181769	1.00[AMR][1000 genomes]
rs74017337	1.00[AMR][1000 genomes]
rs74017338	1.00[AMR][1000 genomes]
rs74017351	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74017352	1.00[AMR][1000 genomes]
rs74017366	1.00[AMR][1000 genomes]
rs8035671	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:8 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv34110	chr15:58949991-59381634	Weak transcription Bivalent Enhancer Strong transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	87 gene(s)	inside rSNPs	diseases
2	nsv527307	chr15:59103328-60018487	Enhancers Genic enhancers Weak transcription Flanking Bivalent TSS/Enh Strong transcription Flanking Active TSS Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	145 gene(s)	inside rSNPs	diseases
3	esv1850946	chr15:59174539-59429160	Enhancers Genic enhancers Weak transcription Strong transcription Flanking Active TSS Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	70 gene(s)	inside rSNPs	diseases
4	nsv904271	chr15:59249584-59393011	Weak transcription Strong transcription Flanking Active TSS Active TSS Enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	8 gene(s)	inside rSNPs	diseases
5	nsv520679	chr15:59268410-59376531	Enhancers Weak transcription Flanking Active TSS Active TSS Strong transcription ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
6	nsv520872	chr15:59268410-59395184	Genic enhancers Weak transcription Enhancers Strong transcription Active TSS Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases
7	nsv510663	chr15:59310676-59370041	Weak transcription Strong transcription Enhancers Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Active TSS Active TSS	TF binding region Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	n/a
8	nsv833025	chr15:59336148-59522176	Strong transcription Weak transcription Genic enhancers Flanking Active TSS Active TSS Enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	37 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:125 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:59344400-59392800	Strong transcription	Monocytes-CD14+_RO01746	blood
2	chr15:59344800-59370400	Strong transcription	Primary T cells from cord blood	blood
3	chr15:59350800-59384600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
4	chr15:59351000-59373200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
5	chr15:59354000-59373200	Weak transcription	Small Intestine	intestine
6	chr15:59354000-59390600	Strong transcription	Primary B cells from peripheral blood	blood
7	chr15:59354400-59396800	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
8	chr15:59355200-59373200	Weak transcription	Psoas Muscle	Psoas
9	chr15:59355400-59373000	Weak transcription	iPS-15b Cell Line	embryonic stem cell
10	chr15:59355400-59392800	Strong transcription	Primary monocytes fromperipheralblood	blood
11	chr15:59355600-59373200	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
12	chr15:59355600-59378400	Strong transcription	Osteobl	bone
13	chr15:59355600-59392800	Strong transcription	Liver	Liver
14	chr15:59355600-59396600	Weak transcription	Fetal Heart	heart
15	chr15:59355800-59386800	Weak transcription	Stomach Mucosa	stomach
16	chr15:59356200-59375400	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
17	chr15:59359400-59373200	Weak transcription	Aorta	Aorta
18	chr15:59359400-59396600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
19	chr15:59359600-59373000	Weak transcription	Colonic Mucosa	Colon
20	chr15:59359600-59373200	Weak transcription	H9 Cell Line	embryonic stem cell
21	chr15:59359600-59373200	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
22	chr15:59359800-59373000	Weak transcription	Esophagus	oesophagus
23	chr15:59359800-59373000	Weak transcription	Stomach Smooth Muscle	stomach
24	chr15:59359800-59373200	Weak transcription	Lung	lung
25	chr15:59359800-59373200	Weak transcription	Rectal Smooth Muscle	rectum
26	chr15:59359800-59373200	Weak transcription	Right Ventricle	heart
27	chr15:59359800-59373200	Weak transcription	Skeletal Muscle Male	skeletal muscle
28	chr15:59360000-59373200	Weak transcription	Brain Cingulate Gyrus	brain
29	chr15:59360200-59373200	Weak transcription	Primary T killer memory cells from peripheral blood	blood
30	chr15:59360400-59373200	Weak transcription	Pancreas	Pancrea
31	chr15:59360400-59373200	Weak transcription	Spleen	Spleen
32	chr15:59360800-59373200	Weak transcription	NHLF	lung
33	chr15:59361200-59373000	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
34	chr15:59361200-59373200	Weak transcription	Gastric	stomach
35	chr15:59362000-59370000	Weak transcription	K562	blood
36	chr15:59362800-59373200	Weak transcription	Fetal Kidney	kidney
37	chr15:59363000-59372400	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
38	chr15:59363200-59373000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
39	chr15:59363200-59373200	Weak transcription	Sigmoid Colon	Sigmoid Colon
40	chr15:59363200-59373200	Weak transcription	HepG2	liver
41	chr15:59363800-59373000	Weak transcription	Thymus	Thymus
42	chr15:59364000-59373000	Weak transcription	NHEK	skin
43	chr15:59364800-59392600	Strong transcription	Primary neutrophils fromperipheralblood	blood
44	chr15:59365200-59371400	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
45	chr15:59365200-59377200	Strong transcription	Dnd41	blood
46	chr15:59365400-59373400	Weak transcription	Fetal Brain Male	brain
47	chr15:59365400-59378000	Strong transcription	HUES64 Cell Line	embryonic stem cell
48	chr15:59365600-59373200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
49	chr15:59365800-59370800	Strong transcription	Fetal Intestine Large	intestine
50	chr15:59365800-59372400	Weak transcription	Fetal Intestine Small	intestine

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