Variant report

Variant	rs74017544
Chromosome Location	chr16:31933010-31933011
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr16:31931465..31935999-chr16:31936605..31940603,7	K562	blood:
2	chr16:31932903..31935520-chr16:31946813..31948460,2	K562	blood:
3	chr16:31932491..31936311-chr16:31936605..31941493,6	K562	blood:

Extended variants
information (count: 39 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:31)

rs_ID	r²[population]
rs28784931	1.00[EUR][1000 genomes]
rs28798712	1.00[EUR][1000 genomes]
rs28803931	1.00[EUR][1000 genomes]
rs28813790	1.00[EUR][1000 genomes]
rs28829329	1.00[EUR][1000 genomes]
rs28838657	1.00[EUR][1000 genomes]
rs28845565	1.00[EUR][1000 genomes]
rs28847351	1.00[EUR][1000 genomes]
rs28847575	1.00[EUR][1000 genomes]
rs28855454	1.00[EUR][1000 genomes]
rs28870502	1.00[EUR][1000 genomes]
rs28874939	1.00[EUR][1000 genomes]
rs28897501	1.00[EUR][1000 genomes]
rs3907736	1.00[EUR][1000 genomes]
rs3907737	1.00[EUR][1000 genomes]
rs4584827	1.00[EUR][1000 genomes]
rs56051141	1.00[EUR][1000 genomes]
rs57379260	1.00[EUR][1000 genomes]
rs58693542	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs60327897	1.00[EUR][1000 genomes]
rs60788729	1.00[EUR][1000 genomes]
rs61321146	1.00[EUR][1000 genomes]
rs61444575	1.00[EUR][1000 genomes]
rs7205954	1.00[EUR][1000 genomes]
rs7339438	1.00[EUR][1000 genomes]
rs7339445	1.00[EUR][1000 genomes]
rs73526430	1.00[EUR][1000 genomes]
rs73526472	1.00[EUR][1000 genomes]
rs74017545	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs74017550	0.87[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs74017570	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:8 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1067321	chr16:31652036-31959992	Enhancers ZNF genes & repeats Strong transcription Weak transcription Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Active TSS Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	45 gene(s)	inside rSNPs	diseases
2	nsv918074	chr16:31669781-31935033	ZNF genes & repeats Weak transcription Genic enhancers Enhancers Strong transcription Active TSS Flanking Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	43 gene(s)	inside rSNPs	diseases
3	nsv1063037	chr16:31669981-31934894	Enhancers Weak transcription Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Active TSS Strong transcription Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	43 gene(s)	inside rSNPs	diseases
4	nsv542903	chr16:31669981-31934894	Flanking Active TSS Weak transcription Enhancers Strong transcription ZNF genes & repeats Active TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	43 gene(s)	inside rSNPs	diseases
5	nsv1066522	chr16:31831196-31959992	ZNF genes & repeats Flanking Active TSS Weak transcription Enhancers Strong transcription Genic enhancers Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	26 gene(s)	inside rSNPs	diseases
6	nsv1057300	chr16:31862900-31959992	Weak transcription ZNF genes & repeats Enhancers Flanking Active TSS Genic enhancers Strong transcription Transcr. at gene 5' and 3' Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	26 gene(s)	inside rSNPs	diseases
7	nsv833196	chr16:31897381-32068953	Strong transcription Weak transcription ZNF genes & repeats Enhancers Active TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
8	esv1850460	chr16:31905688-32097085	Strong transcription ZNF genes & repeats Weak transcription Active TSS Bivalent/Poised TSS Enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Flanking Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr16:31917000-31934000	ZNF genes & repeats	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
2	chr16:31917000-31935200	ZNF genes & repeats	Adipose Nuclei	Adipose
3	chr16:31917000-31935400	ZNF genes & repeats	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
4	chr16:31930400-31933200	Weak transcription	Dnd41	blood
5	chr16:31931200-31936600	Weak transcription	ES-I3 Cell Line	embryonic stem cell

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