Variant report

Variant	rs74018313
Chromosome Location	chr16:31332998-31332999
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 13 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:9)

rs_ID	r²[population]
rs1423935	1.00[AMR][1000 genomes]
rs74015512	1.00[AMR][1000 genomes]
rs74015561	1.00[AMR][1000 genomes]
rs74018304	1.00[AMR][1000 genomes]
rs74018305	1.00[AMR][1000 genomes]
rs74018306	1.00[AMR][1000 genomes]
rs8048937	1.00[AMR][1000 genomes]
rs8049984	1.00[AMR][1000 genomes]
rs8055446	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv431451	chr16:30682399-31340999	Transcr. at gene 5' and 3' Genic enhancers Weak transcription Flanking Active TSS Strong transcription Active TSS Enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	350 gene(s)	inside rSNPs	diseases
2	nsv1059459	chr16:31299088-31462251	Flanking Bivalent TSS/Enh ZNF genes & repeats Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Strong transcription Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	35 gene(s)	inside rSNPs	diseases
3	nsv542901	chr16:31299088-31462251	Active TSS Enhancers Bivalent/Poised TSS Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Strong transcription Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	35 gene(s)	inside rSNPs	diseases
4	esv3392534	chr16:31303038-31573066	Enhancers Flanking Active TSS Strong transcription Weak transcription Genic enhancers Bivalent/Poised TSS Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	104 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr16:31323000-31344600	Strong transcription	Primary neutrophils fromperipheralblood	blood
2	chr16:31326200-31333000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
3	chr16:31331600-31334400	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
4	chr16:31331800-31342000	Weak transcription	Primary T killer memory cells from peripheral blood	blood
5	chr16:31332200-31342000	Strong transcription	Primary mononuclear cells fromperipheralblood	Blood
6	chr16:31332400-31333600	ZNF genes & repeats	Monocytes-CD14+_RO01746	blood
7	chr16:31332400-31333800	ZNF genes & repeats	Primary monocytes fromperipheralblood	blood
8	chr16:31332600-31333200	ZNF genes & repeats	Adipose Nuclei	Adipose
9	chr16:31332600-31333400	Strong transcription	Primary B cells from peripheral blood	blood
10	chr16:31332600-31334000	ZNF genes & repeats	Primary B cells from cord blood	blood
11	chr16:31332800-31333600	ZNF genes & repeats	Skeletal Muscle Female	skeletal muscle

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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