Variant report

Variant	rs74018418
Chromosome Location	chr15:57183036-57183037
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr15:57178056..57181492-chr15:57182204..57185235,4	MCF-7	breast:
2	chr15:57176057..57187872-chr15:57206946..57217524,36	K562	blood:
3	chr15:57179828..57184056-chr15:57314164..57317264,3	K562	blood:
4	chr15:57179607..57181296-chr15:57182021..57184256,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000140262	Chromatin interaction
ENSG00000137871	Chromatin interaction

Extended variants
information (count: 18 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:12)

rs_ID	r²[population]
rs11071295	1.00[EUR][1000 genomes]
rs11071298	0.90[ASN][1000 genomes]
rs12591688	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1619662	0.82[ASN][1000 genomes]
rs1624705	0.81[ASN][1000 genomes]
rs1652742	1.00[EUR][1000 genomes]
rs1657948	0.85[ASN][1000 genomes]
rs1660962	1.00[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs60088657	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs61731444	1.00[EUR][1000 genomes]
rs74018413	0.97[ASN][1000 genomes]
rs74018416	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3422474	chr15:56867190-57244330	Strong transcription ZNF genes & repeats Active TSS Enhancers Weak transcription Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	27 gene(s)	inside rSNPs	diseases
2	nsv833020	chr15:57055947-57216068	Enhancers Flanking Active TSS Weak transcription Active TSS Transcr. at gene 5' and 3' Strong transcription Bivalent Enhancer Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	19 gene(s)	inside rSNPs	diseases
3	nsv457162	chr15:57083006-57225766	Flanking Active TSS Weak transcription Active TSS Enhancers Genic enhancers Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	19 gene(s)	inside rSNPs	diseases
4	nsv569577	chr15:57083006-57225766	Enhancers Strong transcription Active TSS Flanking Active TSS Weak transcription Genic enhancers Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	19 gene(s)	inside rSNPs	diseases
5	nsv1042486	chr15:57094598-57505992	Strong transcription Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	21 gene(s)	inside rSNPs	diseases
6	nsv542393	chr15:57115116-57341363	Enhancers Weak transcription Flanking Active TSS Genic enhancers Active TSS Strong transcription ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	21 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:24 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:57180200-57185000	Weak transcription	Left Ventricle	heart
2	chr15:57180200-57208000	Weak transcription	Fetal Muscle Trunk	muscle
3	chr15:57180400-57184400	Weak transcription	HSMMtube	muscle
4	chr15:57180400-57184800	Weak transcription	Stomach Smooth Muscle	stomach
5	chr15:57180400-57185000	Weak transcription	Psoas Muscle	Psoas
6	chr15:57180400-57196000	Weak transcription	Fetal Brain Female	brain
7	chr15:57180600-57183800	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
8	chr15:57180600-57184800	Weak transcription	Skeletal Muscle Female	skeletal muscle
9	chr15:57180800-57184200	Weak transcription	Fetal Muscle Leg	muscle
10	chr15:57181000-57183200	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
11	chr15:57181000-57184800	Weak transcription	Skeletal Muscle Male	skeletal muscle
12	chr15:57181000-57185200	Weak transcription	Cortex derived primary cultured neurospheres	brain
13	chr15:57181000-57185800	Weak transcription	Brain Anterior Caudate	brain
14	chr15:57181000-57190800	Weak transcription	Brain Inferior Temporal Lobe	brain
15	chr15:57181000-57191400	Weak transcription	Breast Myoepithelial Primary Cells	Breast
16	chr15:57181200-57183800	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
17	chr15:57181200-57184000	Weak transcription	Fetal Heart	heart
18	chr15:57181200-57185600	Weak transcription	Duodenum Smooth Muscle	Duodenum
19	chr15:57181200-57192600	Weak transcription	Brain Hippocampus Middle	brain
20	chr15:57181600-57184200	Weak transcription	Brain Angular Gyrus	brain
21	chr15:57181600-57204000	Weak transcription	Thymus	Thymus
22	chr15:57182000-57209200	Weak transcription	Fetal Stomach	stomach
23	chr15:57182600-57204200	Weak transcription	Fetal Thymus	thymus
24	chr15:57183000-57183400	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin

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