Variant report
| Variant | rs74018845 |
|---|---|
| Chromosome Location | chr15:58363565-58363566 |
| allele | A/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:5)
- CpG islands (count:0)
- Chromatin interactive region (count:6)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
(count:5 , 50 per page) page:
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| No. | Transcrition factor | Chromosome Location | Cell Line | Cell type | Cell Stage | Matched TF binding sites |
|---|---|---|---|---|---|---|
| 1 | CTCF | chr15:58362486-58364010 | A549 | lung: | n/a | n/a |
| 2 | RAD21 | chr15:58362784-58363683 | SK-N-SH | brain: | n/a | n/a |
| 3 | CTCF | chr15:58363460-58363610 | GM06990 | blood: | n/a | n/a |
| 4 | CTCF | chr15:58362723-58363645 | SK-N-SH | brain: | n/a | n/a |
| 5 | SMC3 | chr15:58362778-58363638 | SK-N-SH | brain: | n/a | n/a |
| No data |
(count:6 , 50 per page) page:
1
| No. | Distal block | Cell Line | Cell type | Cell Stage |
|---|---|---|---|---|
| 1 | chr15:58362436..58364377-chr15:58373826..58376648,2 | K562 | blood: | |
| 2 | chr15:58261520..58262217-chr15:58362720..58363602,3 | MCF-7 | breast: | |
| 3 | chr15:58362749..58363649-chr15:58474448..58475386,2 | MCF-7 | breast: | |
| 4 | chr15:58157674..58158877-chr15:58362866..58363674,3 | MCF-7 | breast: | |
| 5 | chr15:58158121..58158992-chr15:58362976..58363943,6 | K562 | blood: | |
| 6 | chr15:58361640..58363619-chr15:58378533..58380318,2 | K562 | blood: |
| No data |
| No data |
| No data |
| Variant related genes | Relation type |
|---|---|
| ALDH1A2 | TF binding region |
rSNPs within LD-proxies of this variant (count:4)
| rs_ID | r2[population] |
|---|---|
| rs28418787 | 0.87[ASN][1000 genomes] |
| rs28433286 | 0.87[ASN][1000 genomes] |
| rs28536172 | 0.83[ASN][1000 genomes] |
| rs2899614 | 0.92[ASN][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv1038667 | chr15:57933076-58481870 | Flanking Active TSS Enhancers Genic enhancers Active TSS Weak transcription Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 22 gene(s) | inside rSNPs | diseases |
| 2 | nsv542400 | chr15:57933076-58481870 | Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Strong transcription Bivalent Enhancer Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 22 gene(s) | inside rSNPs | diseases |
| 3 | nsv904263 | chr15:58340072-58437346 | Bivalent Enhancer Enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers Weak transcription Strong transcription Flanking Active TSS Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNA | 8 gene(s) | inside rSNPs | diseases |
| 4 | nsv569596 | chr15:58355798-58408763 | Enhancers Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Weak transcription Active TSS Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats | TF binding regionCpG islandChromatin interactive regionlncRNA | 7 gene(s) | inside rSNPs | diseases |
| No data |
Chromatin state (count:0 , 50 per page) page:
| No data |
