Variant report

Variant	rs74023408
Chromosome Location	chr15:74346277-74346278
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr15:74346274..74346810-chr15:74666060..74666858,2	MCF-7	breast:
2	chr15:57668365..57669086-chr15:74345790..74346310,2	HCT-116	colon:
3	chr15:74346094..74347046-chr15:74614640..74615508,4	K562	blood:
4	chr15:74346036..74347051-chr15:74419547..74420472,4	MCF-7	breast:
5	chr15:74264967..74265911-chr15:74346172..74346877,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000167178	Chromatin interaction
ENSG00000128849	Chromatin interaction

Extended variants
information (count: 15 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:5)

rs_ID	r²[population]
rs55643282	1.00[ASN][1000 genomes]
rs57156757	1.00[ASN][1000 genomes]
rs59773368	0.83[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61751122	1.00[ASN][1000 genomes]
rs72745388	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:10 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2758387	chr15:74215114-74464916	Enhancers Flanking Active TSS Bivalent/Poised TSS Weak transcription Strong transcription Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	32 gene(s)	inside rSNPs	diseases
2	esv2760040	chr15:74215114-74464916	Weak transcription Enhancers Strong transcription Flanking Bivalent TSS/Enh Active TSS Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	32 gene(s)	inside rSNPs	diseases
3	nsv428308	chr15:74215114-74464916	Transcr. at gene 5' and 3' Enhancers Weak transcription Bivalent Enhancer Bivalent/Poised TSS Strong transcription Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	32 gene(s)	inside rSNPs	diseases
4	nsv833052	chr15:74250378-74377150	Genic enhancers Enhancers Transcr. at gene 5' and 3' Strong transcription Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	14 gene(s)	inside rSNPs	diseases
5	nsv469619	chr15:74291859-74466321	Enhancers Weak transcription Genic enhancers Bivalent Enhancer Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	22 gene(s)	inside rSNPs	diseases
6	nsv482362	chr15:74291859-74466321	Strong transcription Enhancers Weak transcription Bivalent Enhancer Active TSS Flanking Active TSS Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	22 gene(s)	inside rSNPs	diseases
7	nsv457203	chr15:74308940-74347723	Weak transcription Genic enhancers Strong transcription Enhancers Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases
8	nsv569971	chr15:74308940-74347723	Strong transcription Weak transcription Flanking Active TSS Enhancers Genic enhancers Active TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases
9	nsv510666	chr15:74310738-74394745	Enhancers Strong transcription Weak transcription Genic enhancers Flanking Active TSS ZNF genes & repeats Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	12 gene(s)	inside rSNPs	diseases
10	nsv974597	chr15:74339226-74413654	Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer Enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:98 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:74334000-74346600	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
2	chr15:74340800-74346600	Weak transcription	Brain Anterior Caudate	brain
3	chr15:74340800-74346600	Weak transcription	Brain Substantia Nigra	brain
4	chr15:74341400-74346600	Weak transcription	Primary T helper naive cells from peripheral blood	blood
5	chr15:74341400-74346600	Weak transcription	Primary T helper cells PMA-I stimulated	--
6	chr15:74341400-74346600	Weak transcription	Primary T helper cells fromperipheralblood	blood
7	chr15:74342400-74347000	Enhancers	Skeletal Muscle Male	skeletal muscle
8	chr15:74342600-74365400	Weak transcription	Spleen	Spleen
9	chr15:74343400-74346600	Weak transcription	Pancreas	Pancrea
10	chr15:74343400-74350400	Weak transcription	Left Ventricle	heart
11	chr15:74343400-74351200	Weak transcription	Aorta	Aorta
12	chr15:74343400-74358000	Weak transcription	Gastric	stomach
13	chr15:74343600-74346400	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
14	chr15:74343600-74346600	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
15	chr15:74343600-74347200	Enhancers	NHLF	lung
16	chr15:74344200-74346600	Weak transcription	Monocytes-CD14+_RO01746	blood
17	chr15:74344200-74350600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
18	chr15:74344600-74346600	Weak transcription	Primary neutrophils fromperipheralblood	blood
19	chr15:74344600-74352400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
20	chr15:74344800-74346600	Weak transcription	Stomach Mucosa	stomach
21	chr15:74345000-74346600	Weak transcription	Rectal Mucosa Donor 29	rectum
22	chr15:74345000-74346600	Weak transcription	Sigmoid Colon	Sigmoid Colon
23	chr15:74345400-74346400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
24	chr15:74345800-74346600	Enhancers	Duodenum Smooth Muscle	Duodenum
25	chr15:74345800-74346600	Enhancers	Fetal Muscle Trunk	muscle
26	chr15:74345800-74346600	Enhancers	Fetal Muscle Leg	muscle
27	chr15:74345800-74346800	Enhancers	HUES6 Cell Line	embryonic stem cell
28	chr15:74345800-74346800	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
29	chr15:74345800-74346800	Enhancers	HSMMtube	muscle
30	chr15:74345800-74347000	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
31	chr15:74345800-74347000	Enhancers	Primary hematopoietic stem cells	blood
32	chr15:74345800-74347000	Enhancers	Primary hematopoietic stem cells short term culture	blood
33	chr15:74345800-74347000	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
34	chr15:74345800-74347000	Enhancers	Fetal Stomach	stomach
35	chr15:74345800-74347000	Enhancers	HSMM	muscle
36	chr15:74345800-74347000	Enhancers	NHDF-Ad	bronchial
37	chr15:74346000-74346400	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
38	chr15:74346000-74346400	Flanking Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
39	chr15:74346000-74346400	Flanking Active TSS	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
40	chr15:74346000-74346400	Flanking Active TSS	Breast Myoepithelial Primary Cells	Breast
41	chr15:74346000-74346400	Flanking Active TSS	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
42	chr15:74346000-74346400	Flanking Active TSS	Muscle Satellite Cultured Cells	--
43	chr15:74346000-74346400	Flanking Active TSS	Adipose Nuclei	Adipose
44	chr15:74346000-74346400	Flanking Active TSS	Fetal Lung	lung
45	chr15:74346000-74346400	Flanking Active TSS	Osteobl	bone
46	chr15:74346000-74346600	Enhancers	H9 Cell Line	embryonic stem cell
47	chr15:74346000-74346600	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
48	chr15:74346000-74346600	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
49	chr15:74346000-74346600	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
50	chr15:74346000-74346600	Enhancers	Brain Germinal Matrix	brain

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