Variant report

Variant	rs74023452
Chromosome Location	chr15:74521214-74521215
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 12 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:3)

rs_ID	r²[population]
rs58676192	1.00[AFR][1000 genomes]
rs74023411	0.82[AFR][1000 genomes]
rs74023428	0.91[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:9 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv833053	chr15:74360156-74555140	Flanking Bivalent TSS/Enh Bivalent Enhancer Weak transcription Enhancers Flanking Active TSS Genic enhancers Bivalent/Poised TSS Active TSS Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	17 gene(s)	inside rSNPs	diseases
2	nsv833054	chr15:74457643-74625283	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Active TSS ZNF genes & repeats Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases
3	nsv904345	chr15:74458181-74526596	Active TSS Bivalent Enhancer Weak transcription Flanking Active TSS Enhancers Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
4	nsv904346	chr15:74458181-74548773	Flanking Active TSS Enhancers Transcr. at gene 5' and 3' Weak transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Active TSS Genic enhancers Bivalent/Poised TSS Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
5	nsv904347	chr15:74462629-74537101	Flanking Active TSS Weak transcription Bivalent Enhancer Genic enhancers Enhancers Flanking Bivalent TSS/Enh Strong transcription Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
6	nsv904348	chr15:74462629-74542686	Genic enhancers Enhancers Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Active TSS Weak transcription Strong transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
7	nsv471253	chr15:74489207-74545148	Weak transcription Enhancers Bivalent/Poised TSS Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh Genic enhancers Strong transcription Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
8	nsv904349	chr15:74500105-74542686	Enhancers Flanking Bivalent TSS/Enh Weak transcription Flanking Active TSS Bivalent Enhancer Strong transcription ZNF genes & repeats Active TSS Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
9	nsv904350	chr15:74500105-74548773	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Active TSS Strong transcription ZNF genes & repeats Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:44 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:74512200-74522600	Enhancers	Fetal Brain Male	brain
2	chr15:74515400-74522400	Enhancers	Fetal Brain Female	brain
3	chr15:74519200-74521600	Enhancers	Colonic Mucosa	Colon
4	chr15:74519600-74521400	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
5	chr15:74519600-74521600	Bivalent Enhancer	HUES6 Cell Line	embryonic stem cell
6	chr15:74519800-74521400	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
7	chr15:74519800-74521400	Enhancers	Brain Inferior Temporal Lobe	brain
8	chr15:74519800-74522600	Enhancers	Cortex derived primary cultured neurospheres	brain
9	chr15:74520000-74521400	Bivalent Enhancer	HUES48 Cell Line	embryonic stem cell
10	chr15:74520000-74521400	Enhancers	Brain Dorsolateral Prefrontal Cortex	brain
11	chr15:74520000-74524000	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
12	chr15:74520200-74521400	Enhancers	Rectal Mucosa Donor 29	rectum
13	chr15:74520200-74521600	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
14	chr15:74520200-74521600	Genic enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
15	chr15:74520200-74521600	Enhancers	Fetal Stomach	stomach
16	chr15:74520200-74522200	Enhancers	Brain Germinal Matrix	brain
17	chr15:74520200-74522200	Bivalent Enhancer	Fetal Adrenal Gland	Adrenal Gland
18	chr15:74520200-74522600	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
19	chr15:74520400-74521400	Enhancers	Brain Anterior Caudate	brain
20	chr15:74520400-74521400	Enhancers	Right Ventricle	heart
21	chr15:74520400-74521400	Enhancers	Skeletal Muscle Female	skeletal muscle
22	chr15:74520400-74521400	Enhancers	Stomach Mucosa	stomach
23	chr15:74520400-74521600	Enhancers	Left Ventricle	heart
24	chr15:74520400-74521600	Enhancers	Ovary	ovary
25	chr15:74520400-74521600	Enhancers	Rectal Mucosa Donor 31	rectum
26	chr15:74520400-74521800	Enhancers	Fetal Lung	lung
27	chr15:74520400-74523200	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
28	chr15:74520600-74521400	Flanking Bivalent TSS/Enh	Skeletal Muscle Male	skeletal muscle
29	chr15:74520600-74521400	Enhancers	Osteobl	bone
30	chr15:74520600-74521600	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
31	chr15:74520600-74521600	Bivalent Enhancer	Placenta	Placenta
32	chr15:74520600-74523600	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
33	chr15:74520800-74521400	Flanking Active TSS	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
34	chr15:74520800-74521400	Flanking Active TSS	Foreskin Melanocyte Primary Cells skin03	Skin
35	chr15:74520800-74521400	Flanking Bivalent TSS/Enh	Fetal Muscle Trunk	muscle
36	chr15:74520800-74521400	Enhancers	Right Atrium	heart
37	chr15:74520800-74521400	Enhancers	NH-A	brain
38	chr15:74520800-74521600	Enhancers	H1 Cell Line	embryonic stem cell
39	chr15:74520800-74521600	Enhancers	Lung	lung
40	chr15:74521000-74521400	Bivalent Enhancer	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
41	chr15:74521200-74521400	Flanking Bivalent TSS/Enh	Foreskin Fibroblast Primary Cells skin02	Skin
42	chr15:74521200-74521600	Enhancers	Spleen	Spleen
43	chr15:74521200-74522200	Enhancers	Adipose Nuclei	Adipose
44	chr15:74521200-74522400	Enhancers	Fetal Muscle Leg	muscle

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links