Variant report

Variant	rs74024080
Chromosome Location	chr15:76358164-76358165
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr15:76355984..76360191-chr15:76360720..76364307,4	K562	blood:
2	chr15:76357902..76359560-chr15:76359834..76362624,2	K562	blood:

Extended variants
information (count: 12 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:8)

rs_ID	r²[population]
rs60180571	1.00[AMR][1000 genomes]
rs7174298	1.00[AMR][1000 genomes]
rs74024008	1.00[AMR][1000 genomes]
rs74024018	1.00[AMR][1000 genomes]
rs74024031	1.00[AMR][1000 genomes]
rs74024058	1.00[AMR][1000 genomes]
rs74024078	1.00[AMR][1000 genomes]
rs8032468	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv904398	chr15:76220285-76359055	Enhancers Strong transcription Weak transcription Active TSS Bivalent/Poised TSS Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	6 gene(s)	inside rSNPs	diseases
2	nsv569998	chr15:76232605-76550938	Enhancers Flanking Active TSS Weak transcription Strong transcription ZNF genes & repeats Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	12 gene(s)	inside rSNPs	diseases
3	nsv1617	chr15:76332103-76359435	Weak transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Enhancers Active TSS Flanking Active TSS Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
4	nsv1048760	chr15:76334544-76496977	Enhancers Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS Weak transcription Bivalent Enhancer Flanking Active TSS Strong transcription Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:29 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:76353000-76363000	Weak transcription	Placenta Amnion	Placenta Amnion
2	chr15:76353000-76363800	Weak transcription	Lung	lung
3	chr15:76353000-76364000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
4	chr15:76353200-76365800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
5	chr15:76355800-76358200	Enhancers	iPS-20b Cell Line	embryonic stem cell
6	chr15:76356000-76358400	Enhancers	iPS-18 Cell Line	embryonic stem cell
7	chr15:76356800-76358400	Enhancers	H1 Cell Line	embryonic stem cell
8	chr15:76357000-76358200	Enhancers	Fetal Adrenal Gland	Adrenal Gland
9	chr15:76357200-76358400	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
10	chr15:76357200-76358600	Enhancers	Primary monocytes fromperipheralblood	blood
11	chr15:76357400-76358400	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
12	chr15:76357400-76358400	Enhancers	Monocytes-CD14+_RO01746	blood
13	chr15:76357600-76358200	Bivalent Enhancer	Primary T helper memory cells from peripheral blood 1	blood
14	chr15:76357600-76358200	Enhancers	Primary T helper cells PMA-I stimulated	--
15	chr15:76357600-76358200	Bivalent Enhancer	Primary T helper cells fromperipheralblood	blood
16	chr15:76357600-76358200	Enhancers	Primary T killer naive cells fromperipheralblood	blood
17	chr15:76357600-76358400	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
18	chr15:76357600-76358400	Bivalent Enhancer	Primary T cells fromperipheralblood	blood
19	chr15:76357600-76358400	Flanking Active TSS	Skeletal Muscle Female	skeletal muscle
20	chr15:76357600-76359000	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
21	chr15:76357600-76359400	Enhancers	Pancreas	Pancrea
22	chr15:76357800-76358400	Enhancers	Primary T helper naive cells fromperipheralblood	blood
23	chr15:76357800-76358400	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
24	chr15:76357800-76358400	Enhancers	Placenta	Placenta
25	chr15:76357800-76358600	Enhancers	Primary T cells from cord blood	blood
26	chr15:76357800-76359200	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
27	chr15:76358000-76358200	Enhancers	Psoas Muscle	Psoas
28	chr15:76358000-76358200	Enhancers	Skeletal Muscle Male	skeletal muscle
29	chr15:76358000-76358400	Enhancers	H9 Cell Line	embryonic stem cell

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