Variant report

Variant	rs7402437
Chromosome Location	chr15:100270772-100270773
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr15:99813220..99813808-chr15:100269972..100270827,2	K562	blood:
2	chr15:100243706..100244404-chr15:100270250..100270849,2	MCF-7	breast:
3	chr15:100266948..100268782-chr15:100268887..100270856,3	MCF-7	breast:

Extended variants
information (count: 23 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:10)

rs_ID	r²[population]
rs11853793	1.00[CHD][hapmap]
rs12594983	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[TSI][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs12901576	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs12902114	0.81[AFR][1000 genomes];0.91[ASN][1000 genomes]
rs35077957	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs35643336	0.86[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs6598261	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.88[YRI][hapmap];0.82[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs6598262	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs7496665	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[TSI][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs8025780	1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[TSI][hapmap];0.82[YRI][hapmap];0.82[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:13 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1036346	chr15:99752391-100365458	Flanking Bivalent TSS/Enh Flanking Active TSS Strong transcription Enhancers Weak transcription Active TSS Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	47 gene(s)	inside rSNPs	diseases
2	nsv542520	chr15:99752391-100365458	Enhancers Flanking Active TSS Weak transcription Active TSS Strong transcription Genic enhancers ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	47 gene(s)	inside rSNPs	diseases
3	nsv817201	chr15:99839238-100537341	Weak transcription Strong transcription Flanking Active TSS Enhancers Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	36 gene(s)	inside rSNPs	diseases
4	nsv1038005	chr15:100170414-100633714	Strong transcription Weak transcription Enhancers Flanking Active TSS Genic enhancers Active TSS Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	24 gene(s)	inside rSNPs	diseases
5	nsv542522	chr15:100170414-100633714	Strong transcription Enhancers Weak transcription Flanking Active TSS Genic enhancers Active TSS Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	24 gene(s)	inside rSNPs	diseases
6	nsv904560	chr15:100196657-100339331	Strong transcription Weak transcription Enhancers Genic enhancers Active TSS ZNF genes & repeats Bivalent Enhancer Flanking Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	14 gene(s)	inside rSNPs	diseases
7	nsv904561	chr15:100204918-100486828	Strong transcription Flanking Active TSS Enhancers Weak transcription Active TSS Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	20 gene(s)	inside rSNPs	diseases
8	nsv428313	chr15:100236203-100757039	Weak transcription Enhancers Strong transcription Flanking Active TSS Active TSS Bivalent Enhancer ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	23 gene(s)	inside rSNPs	diseases
9	nsv904563	chr15:100239546-100274747	Enhancers Active TSS Flanking Active TSS Weak transcription Strong transcription Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases
10	nsv570730	chr15:100240910-100700520	Flanking Active TSS Weak transcription Enhancers Active TSS Bivalent Enhancer Genic enhancers Strong transcription ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	22 gene(s)	inside rSNPs	diseases
11	nsv1045838	chr15:100243067-101032218	Weak transcription Enhancers Flanking Active TSS Genic enhancers Bivalent Enhancer Strong transcription Bivalent/Poised TSS Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	33 gene(s)	inside rSNPs	diseases
12	nsv904564	chr15:100245296-100723798	Bivalent/Poised TSS Enhancers Active TSS Weak transcription Flanking Active TSS Bivalent Enhancer Genic enhancers Strong transcription ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	22 gene(s)	inside rSNPs	diseases
13	nsv932678	chr15:100250311-101012358	Enhancers Active TSS Weak transcription Flanking Active TSS Strong transcription Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	33 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs7402437	STK17B	trans	lymphoblastoid	seeQTL

Chromatin state (count:122 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:100244600-100272400	Weak transcription	Pancreatic Islets	Pancreatic Islet
2	chr15:100249600-100272800	Weak transcription	Small Intestine	intestine
3	chr15:100249800-100272200	Weak transcription	HUVEC	blood vessel
4	chr15:100251800-100271800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
5	chr15:100252200-100271400	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
6	chr15:100253000-100271800	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
7	chr15:100253600-100272400	Weak transcription	Stomach Mucosa	stomach
8	chr15:100258000-100272000	Weak transcription	Monocytes-CD14+_RO01746	blood
9	chr15:100259800-100272200	Weak transcription	Osteobl	bone
10	chr15:100261600-100272400	Weak transcription	Primary B cells from peripheral blood	blood
11	chr15:100261800-100272000	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
12	chr15:100261800-100272000	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
13	chr15:100261800-100272600	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
14	chr15:100262000-100272200	Weak transcription	Primary T helper naive cells from peripheral blood	blood
15	chr15:100262000-100272400	Weak transcription	Primary T killer memory cells from peripheral blood	blood
16	chr15:100262200-100272400	Weak transcription	Primary T helper cells PMA-I stimulated	--
17	chr15:100262800-100272400	Weak transcription	Primary B cells from cord blood	blood
18	chr15:100265400-100272000	Weak transcription	Hela-S3	cervix
19	chr15:100265800-100271400	Weak transcription	Primary hematopoietic stem cells	blood
20	chr15:100266200-100272200	Weak transcription	NH-A	brain
21	chr15:100266200-100272400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
22	chr15:100266400-100271400	Weak transcription	Primary monocytes fromperipheralblood	blood
23	chr15:100266600-100271600	Strong transcription	Fetal Thymus	thymus
24	chr15:100267000-100271400	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
25	chr15:100267600-100272400	Enhancers	Fetal Heart	heart
26	chr15:100268200-100271200	Strong transcription	Cortex derived primary cultured neurospheres	brain
27	chr15:100268600-100272000	Weak transcription	Right Atrium	heart
28	chr15:100269200-100271800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
29	chr15:100269200-100272400	Weak transcription	Primary neutrophils fromperipheralblood	blood
30	chr15:100269400-100270800	Genic enhancers	Fetal Intestine Large	intestine
31	chr15:100269400-100271000	Weak transcription	iPS-15b Cell Line	embryonic stem cell
32	chr15:100269400-100271000	Weak transcription	iPS-20b Cell Line	embryonic stem cell
33	chr15:100269400-100271800	Weak transcription	Brain Anterior Caudate	brain
34	chr15:100269400-100271800	Weak transcription	Right Ventricle	heart
35	chr15:100269600-100271600	Weak transcription	Placenta	Placenta
36	chr15:100269600-100271800	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
37	chr15:100269600-100271800	Weak transcription	Skeletal Muscle Male	skeletal muscle
38	chr15:100269600-100272000	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
39	chr15:100269600-100272000	Weak transcription	Brain Germinal Matrix	brain
40	chr15:100269600-100272000	Weak transcription	Brain Inferior Temporal Lobe	brain
41	chr15:100269600-100272000	Enhancers	Fetal Lung	lung
42	chr15:100269600-100272200	Weak transcription	Brain Substantia Nigra	brain
43	chr15:100269600-100272200	Weak transcription	HSMMtube	muscle
44	chr15:100269600-100272400	Weak transcription	Rectal Mucosa Donor 31	rectum
45	chr15:100269600-100272600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
46	chr15:100269800-100271000	Weak transcription	H1 Cell Line	embryonic stem cell
47	chr15:100269800-100271000	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
48	chr15:100269800-100271200	Enhancers	Breast Myoepithelial Primary Cells	Breast
49	chr15:100269800-100271200	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
50	chr15:100269800-100271400	Weak transcription	Primary hematopoietic stem cells short term culture	blood

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